Gene Pmen_2253 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2253 
Symbol 
ID5109197 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2482149 
End bp2484056 
Gene Length1908 bp 
Protein Length635 aa 
Translation table11 
GC content44% 
IMG OID640503496 
Producthypothetical protein 
Protein accessionYP_001187744 
Protein GI146307279 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000796594 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.115839 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGAAA AGATCTCGCG AGAGCGTATT GTTTTTGTTG GATTTGAAGT GGTTGACCCA 
TCATTGATGG ATGCATCTAG CAAGGATATA TTTCTTAGGC GAAGAGAGGC GATAAGATTA
CGGCTTGACG GAAATACCGG AAAAGAGATC AGAAAAGTCA CTGGGATTCA AGAAAGTGAG
GTCACTAGGC TATTTAAGCG ATATACCACG CTTAATGATA AAGGAATATA TTCAGGGGAG
GCTGGATTAA TACCTGGATA TCGAATCAAC CCATACCAAC GAGTTAAGCC GCCAGAAGCA
AAAGCCAGTG AGGGTCAAGG CGGTCTCTCT GGGGTGCTTA GTTATACCTT GGCCAAATAT
CCTGGATTGG TGGTGAAGTT CGAGTCAGAA GTACTCCGAA GATCGATAAA ATTCGGGCAT
GGAGCAAAAT TTAGAAAAAA AGGGCTATGC CAAGTTTTTT ATGACATTTG TAAGTCTGAG
GGTGTTGGGA GCGGGGAGTG GCCATTGAAC CAGCCTCGTG GCGCTCGAAA GACCATAGGA
AAATATATCG ACGAAATTCT TAATAATGAC TTCAGCAGAG CCGCTCTCGT AAGCGGCGGA
AGGGTCGCGT TAACTCATAG CAAGGTTGGA ACGGGTTTTA TTCCATTGCT AGAAGATTTT
GATGTCTATG ACTTTATTGA GATTGACTCC TGGCACATGG ACGCTTTTTT TGTACTCAAT
ATCAGTGGTG ATAAGAGGGT TAAAACTAAA GATGTAATTA GCAGAATCTG GATGATTGCG
GCTGTTTGCC GTCGAAGCAA TGCAGTCCTC GCTATAAAGT TTGTTTTTTC AAGCGAAATT
AGATCGCAGG ATCTAATGGA TCTAATTTGT GATGCTTATG CCGGAACGTG GTCGCCCCGC
ACAGCTCTTA ATGTTCGTGA TTTAAAATAC ACTGCCTCAG CTGGAATGCC ATGCTATTCA
GTTCCTGCTC TACGCCATCA TAGCTGGGGA GCTGTATGTT TAGATAATGC TATGCAGCAC
CATGCAACTA AGATTTATGA GTTGGCCCTC CATACATTAG GCTTTGCTAT AAATTACGGC
CCGTTAGAGC AGCCTGCGCG AAGGTCAAAA GTAGAGGGGC TGTTTAGGCG AATAGCAACA
AACGTGATCC ATCAAATTTC ATCCACTACT GGAAGTAGCC CTCAAGATGG TAGGGCTGAA
TCGCCAGAAA AAGCCGCCGT ATATTACCAG ATTGATGTAG ATGATGCTCT GGAAGTTATG
GATGTGTTTG CCGCAAATTA TAATGGAATA CCTCAAGGTG GACTAAATAA GGCAAGTAGC
CCGCTTGAGA TACTGTGTGC TTACAGTCTG GACAAGGAGG TGATTCTGCC AAAGAGCAAT
GAGATTTACC TGAATAGCAT TTGTTTAGGA AGTTCTACCG TTCAAGCAAG GGTTACAGGA
AACGTAGCTA AAGGTATAAG ACCTAGAATA AAGCTTGATC AAGCCCTTTA TACCTCCCCA
GATCTGGCTA ATTCCCCGCA TTTAATCGGG ACGAGTCTGC TTGTGCGTAT TAACCCTCAC
GACTATCGAA CTGTAGAGGC TTACCTGCCT GAAGGGATTT ACTTCGGAAT TCTCAACGTC
GAGGCTGCTT GGAGAAATAT CAAGCATAGT GTCACTACTC GTCGCCTGGT TAATAGAGCT
CAAGCAAAAA AAGAGTTCGA AATAATGGAG GGTGAGAACC CCATACTAGC CTGGAAGAGA
CACCTTATAG CTAATTCTAG CGTCAAAAAT AATTTGGAAT TAGCGCGACT CAATGGTGAC
TTAGAAAGCA AATCTGTGCG TACGCAGTTC GAGCCGTCCG ACGAAATACC GGATCATACG
AGAAAAAGCA CATCTGAGCG ATGGAAGAAT CTAGACATTT TAAGGTGA
 
Protein sequence
MSEKISRERI VFVGFEVVDP SLMDASSKDI FLRRREAIRL RLDGNTGKEI RKVTGIQESE 
VTRLFKRYTT LNDKGIYSGE AGLIPGYRIN PYQRVKPPEA KASEGQGGLS GVLSYTLAKY
PGLVVKFESE VLRRSIKFGH GAKFRKKGLC QVFYDICKSE GVGSGEWPLN QPRGARKTIG
KYIDEILNND FSRAALVSGG RVALTHSKVG TGFIPLLEDF DVYDFIEIDS WHMDAFFVLN
ISGDKRVKTK DVISRIWMIA AVCRRSNAVL AIKFVFSSEI RSQDLMDLIC DAYAGTWSPR
TALNVRDLKY TASAGMPCYS VPALRHHSWG AVCLDNAMQH HATKIYELAL HTLGFAINYG
PLEQPARRSK VEGLFRRIAT NVIHQISSTT GSSPQDGRAE SPEKAAVYYQ IDVDDALEVM
DVFAANYNGI PQGGLNKASS PLEILCAYSL DKEVILPKSN EIYLNSICLG SSTVQARVTG
NVAKGIRPRI KLDQALYTSP DLANSPHLIG TSLLVRINPH DYRTVEAYLP EGIYFGILNV
EAAWRNIKHS VTTRRLVNRA QAKKEFEIME GENPILAWKR HLIANSSVKN NLELARLNGD
LESKSVRTQF EPSDEIPDHT RKSTSERWKN LDILR