| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2234 |
|---|
| Symbol | |
|---|
| ID | 5109178 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2465696 |
|---|
| End bp | 2466373 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640503477 |
|---|
| Product | two component heavy metal response transcriptional regulator |
|---|
| Protein accession | YP_001187725 |
|---|
| Protein GI | 146307260 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | [TIGR01387] heavy metal response regulator |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.162422 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTAC TGGTAGCTGA AGACGAACCC AAAACCGGTA CGTACCTCCA GCAAGGTCTC
ACCGAGGCTG GGTTCAATGT CGACCGGGTT ATGACCGGTA CAGATGCCCT TCAGCATGCA
CTTAGCGAAG CCTATGACCT GCTAATTCTG GATGTAATGA TGCCTGGGCT GGACGGTTGG
GAAGTGCTGC GCATGTTGCG CGCAGCAGGA AAAGACGTCC CCGTACTGTT CTTGACGGCA
CGCGATGGTG TGGAAGACCG CGTAAAAGGG TTGGAGCTGG GTGCGGACGA CTACCTGATC
AAGCCATTTG CTTTCTCAGA GCTTCTGGCC AGGGTCAGAA CGCTGTTGCG CAGAGGTAAT
GGTTCGCCGA CGCAGACCAC CATGAAAATT GCCGATCTGG AAGTCGATCT GATGAAGCGG
CGTGCGATCC GTGGCGGGAA AAGAATTGAC CTGACCGCGA AGGAGTTTTC ACTGCTGGAA
CTGCTACTGC GCCGGCGCGG CGAGGTGCTC CCGAAGTCGC TGATTGCCTC TCAGGTTTGG
GACATGAATT TCGACAGCGA CACCAATGTC ATTGAGGTTG CGGTACGCCG GCTACGCGCA
AAAATCGATG ACGATTTCGA TCTCAAGCTG ATTCATACCG CCCGCGGCAT GGGATACATG
ATGGATGCTC CGGAGTGA
|
|---|
| Protein sequence | MKLLVAEDEP KTGTYLQQGL TEAGFNVDRV MTGTDALQHA LSEAYDLLIL DVMMPGLDGW
EVLRMLRAAG KDVPVLFLTA RDGVEDRVKG LELGADDYLI KPFAFSELLA RVRTLLRRGN
GSPTQTTMKI ADLEVDLMKR RAIRGGKRID LTAKEFSLLE LLLRRRGEVL PKSLIASQVW
DMNFDSDTNV IEVAVRRLRA KIDDDFDLKL IHTARGMGYM MDAPE
|
|---|
| |