| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2212 |
|---|
| Symbol | |
|---|
| ID | 5109157 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2445697 |
|---|
| End bp | 2448846 |
|---|
| Gene Length | 3150 bp |
|---|
| Protein Length | 1049 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640503456 |
|---|
| Product | CzcA family heavy metal efflux protein |
|---|
| Protein accession | YP_001187704 |
|---|
| Protein GI | 146307239 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.589008 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.652924 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCGC GCCTGATTCA CTGGTCGATA GGCAACCGCT TCCTGGTGCT GCTGGCGACC
CTGTTCATCA CCGCTTTAGG GATCTGGTCG TTGCGCAACA CGCCAGTGGA CGCTTTGCCG
GATCTCTCAG ACACCCAAGT CATCATCAGA ACCAGCTTTC CCGGCCAGGC GCCGCAGATC
GTCGAGAATC AGGTGACCTA TCCGCTGGCC ACCACCATGC TCTCGGTTCC GGGGGCGAAG
ACGGTGCGCG GCTACTCGTT CTTCGGCGAC TCCTTCGTCT ACGTGCTGTT CGAGGACGAC
ACCGATCTCT ACTGGGCGCG CTCGCGCGTG CTGGAGTACC TCAACCAGGC CCAGGATCGC
CTGCCCGAGG GTGTTACCAC CACCCTTGGG CCGGATGCCA CCGGCGTGGG CTGGATCTAC
CAGTACGCCT TGGTCGACCG CAGCGGCCAG CATGATCTTG CCCAGCTGCG GGCACTGCAG
GACTGGTTCC TCAAGTACGA ACTCAAGAGC CTGCCCAACG TAGCCGAAGT GGCCACCCTC
GGCGGCATGG TCAAGCAATA CCAAGTGCTG CTCGATCCGC AGAAGCTGGT GGCTTATGGG
GTAACTCAGC AGGAGGTCGA AGCGGCGCTG AAGAGCGCCA ATCAGGAAAC CGGCGGCGCC
ATCTTGGAGC TGGCGGAGCG CGAGTACATG GTGCGGGCCT CGGGCTATTT GGAGAGCCTG
GATGATTTTC GCAATGTGCC GCTGCGGGCT TCGGCAAGCG GAATTCCGGT GCTGCTAGGC
CAGGTGGCCA CCATTCAACT GGGGCCAGAG ATGCGTCGCG GTATCGCCGA ATTGGACGGC
CAGGGTGAAG TGGTCGGTGG CGTGGTCATC CTGCGCTCCG GCAAGAATGC CCGGGACACC
ATCGCTGCCG TGAAGACCAA GCTGGACAGC CTGAAAGCCA GCCTGCCCAC CGGCGTCGAA
GTGGTCACTA CCTATGACCG TTCGCAACTG ATCGACCGCG CCATCGATAA CCTCAGCTAC
AAGCTGCTGG AGGAGTTCGT AGTGGTGGCC TTGGTCTGCC TGATATTCCT CTGGCACCTG
CGCTCGTCGC TGGTCGCGAT CATCACCCTG CCCCTGGGCA TCCTGATGGC ATTCATCGTC
ATGCGCTACC AAGGCGTCAA TGCCAACATC ATGTCGCTGG GCGGGATCGC CATCGCCATC
GGCGCCATGG TCGATGCCGC TGTGGTGATG ATCGAGAACG CGCACAAGCA CATCGAGGCC
TGGAAGGCGC GACACCCAAA TGAGCCGCTT CAGGGTGAGG CGCACTGGCG AGTGATCGGC
GAAGCCGCGG CCGAAGTCGG ACCGGCACTC TTTTTCAGCC TGCTGATCAT CACCCTATCG
TTCCTCCCGG TCTTTACCCT GGAGGCCCAG GAAGGACGCC TATTCGGCCC ACTGGCCTTT
ACCAAGACCT ATGCCATGGC CGCCGCCGCC GGCCTCTCGG TCACCCTCGT ACCGGTGCTG
ATGGGCTACT GGATTCGTGG GCATATCCCC AGCGAACAGC AAAACCCCTT GAACCGCTGG
CTGATCGGCG CATACCGGCC GGTGCTGGAG TGGGTGCTGG CCTGGCCCAA GGTGACCTTG
GCGCTGGCCG TGCTGGTCTT TGTGTCCAGT CTGTGGCCCC TCAGCAGACT CGGAGGAGAG
TTCCTGCCGC CCATGGACGA AGGCGATCTG TTGTACATGC CTTCGGCCCT GCCCGGCTTG
CCGGCGAGCA AGGCAACCCA GCTGCTGCAG CAAACCAACC GCATGATCCT CACGGTGCCG
GAGGTGGCCC GGGTATTCGG CAAAGCCGGG CGAGCGGAGA CAGCCACCGA TCCGGCGCCG
CTGGAAATGT TCGAGACCAC CGTGCAGTTC AAGCCGCGCG AGCAATGGCG CGCGGGTATG
ACGCCGGAGA AGCTGATTGA GGAGCTGGAT CGTGCGGTGA AAGTCCCAGG GCTGTCCAAC
ATCTGGGTGC CGCCAATTCG CAACCGCATC GACATGCTGG CCACGGGGAT CAAGAGCCCC
ATCGGCGTGA AGGTCTCCGG AACCTCCCTG GTCGATATCG AGCGCATTAC TCGCGATATC
GAGGTGGTGG CCAAAGATGT ACCTGGGGTG AGCTCAGCGC TGGCAGAGCG CCTCACCGGC
GGACGCTATG TGGATATCCA GATCGATCGC CTGGCCGCGG CACGCTACGG CCTGAGCATT
GCCGACGTAC AAGCGGTGGT ATCGGGTGCC ATTGGCGGCA GCAATATCGG CGAGACGGTC
GAAGGATTGG CCCGCTTTCC GATTAACCTG CGCTATCCCA AGGAGTGGCG GGACAGTCCC
CAGGCGCTAA GGCGTATGCC GATCCTCACC CCTGCTGGCC AGCAGATCAC CTTGGGCACC
GTCGCCCAGG TTAGCCTGAC CGAAGGGCCG CCGATGCTGC GCAGCGAGAA CGGGCGCCTG
TCAGGCTGGG TGTATGTCGA TGTCCGTGGG CGCGACCTGG CATCGACCGT GCGTGAGCTG
CAGCAACGCG TAGCTGAGCG GGTAAAACTC GACGCCGGCA TGACCGTTTC TTACTCCGGT
CAGTTTGAGT ACCTGGAGCG CGCCAATGCG CGGCTGTCCT GGGTGGTGCC GGCGACCTTG
TTGATTATCT TCGTGCTGCT CTACCTGACC TTCAGCCGCT TCAGCGAGGC CCTGCTGATC
ATGGCCACCC TGCCCTTCGC CCTGTCGGGG GGCATCTGGC TGCTCTATTG GTTCGGCTTC
AACTTGTCGG TGGCCACTGG GGTCGGCTTC ATTGCCCTGG CCGGCGTCTC GGCCGAGTTC
GGGGTGATCA TGCTGTTGTA TTTGAAGAAC GCCTGGCATG CTCGGCTGGA CTCCGGACGC
AGCGGTGATC CGGCCCTGCT TGAGGCCATT CGGGAAGGCG CGGTGCTGCG TGTCCGTCCC
AAGGTGATGA CGGTTGCCGT GATCATTGCC GGCCTGCTGC CCATTCTCTG GGGCGGTGGA
GCGGGTTCAG AGGTGATGAA GCGCATTGCC GCCCCCATGG TTGGCGGCAT GATCACCGCC
CCGCTGATGT CCATGCTGGT CTTGCCGGCC GCCTACTGGC TGATGCGAAG GCAGCATACA
CAGAAGGTTC GCGCACCGCA GGAGCTATAG
|
|---|
| Protein sequence | MIARLIHWSI GNRFLVLLAT LFITALGIWS LRNTPVDALP DLSDTQVIIR TSFPGQAPQI
VENQVTYPLA TTMLSVPGAK TVRGYSFFGD SFVYVLFEDD TDLYWARSRV LEYLNQAQDR
LPEGVTTTLG PDATGVGWIY QYALVDRSGQ HDLAQLRALQ DWFLKYELKS LPNVAEVATL
GGMVKQYQVL LDPQKLVAYG VTQQEVEAAL KSANQETGGA ILELAEREYM VRASGYLESL
DDFRNVPLRA SASGIPVLLG QVATIQLGPE MRRGIAELDG QGEVVGGVVI LRSGKNARDT
IAAVKTKLDS LKASLPTGVE VVTTYDRSQL IDRAIDNLSY KLLEEFVVVA LVCLIFLWHL
RSSLVAIITL PLGILMAFIV MRYQGVNANI MSLGGIAIAI GAMVDAAVVM IENAHKHIEA
WKARHPNEPL QGEAHWRVIG EAAAEVGPAL FFSLLIITLS FLPVFTLEAQ EGRLFGPLAF
TKTYAMAAAA GLSVTLVPVL MGYWIRGHIP SEQQNPLNRW LIGAYRPVLE WVLAWPKVTL
ALAVLVFVSS LWPLSRLGGE FLPPMDEGDL LYMPSALPGL PASKATQLLQ QTNRMILTVP
EVARVFGKAG RAETATDPAP LEMFETTVQF KPREQWRAGM TPEKLIEELD RAVKVPGLSN
IWVPPIRNRI DMLATGIKSP IGVKVSGTSL VDIERITRDI EVVAKDVPGV SSALAERLTG
GRYVDIQIDR LAAARYGLSI ADVQAVVSGA IGGSNIGETV EGLARFPINL RYPKEWRDSP
QALRRMPILT PAGQQITLGT VAQVSLTEGP PMLRSENGRL SGWVYVDVRG RDLASTVREL
QQRVAERVKL DAGMTVSYSG QFEYLERANA RLSWVVPATL LIIFVLLYLT FSRFSEALLI
MATLPFALSG GIWLLYWFGF NLSVATGVGF IALAGVSAEF GVIMLLYLKN AWHARLDSGR
SGDPALLEAI REGAVLRVRP KVMTVAVIIA GLLPILWGGG AGSEVMKRIA APMVGGMITA
PLMSMLVLPA AYWLMRRQHT QKVRAPQEL
|
|---|
| |