| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2211 |
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| Symbol | |
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| ID | 5109156 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2444240 |
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| End bp | 2445700 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640503455 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001187703 |
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| Protein GI | 146307238 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
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| COG ID | [COG0845] Membrane-fusion protein
[COG5569] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.450324 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.240082 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATTT CAGCATTAGG TTTTTCCGCG GCCTTGCTGA CCATGGGCAT TGCCGCGGCA
GGCGGTGGCT ACTGGCTGGC CGAGAGGCCG GCCAAACATG AGGTGATGCC AACTCCCGCA
CCGACGGATG AGCGCAAAGT GCTCTACTGG TATGACCCGA TGCAACCTGA CCAGCGCTTC
GATAAACCGG GCAAGTCCCC CTTCATGGAT ATGGAGCTTG TCCCCAAGTA CGCAGATGTA
GGGCAGGACT CCTCGACCCT GAGCGTGCCC TCGCAAGCCG TGCAAAATCT CGGGATGCGC
ACCGCGCCAG TAACTCGCGG TGTGCTGCCT TCGGGTATCG AGGCCGTCGG TTCCCTGGCC
TATAACCAGC GCGAGGTGGC GAACCAGCAG GCCCGAGCGG GTGGGTTCGT CGAGCGGGTC
TACGGACACG CCCCTGGCGA TGTATTGCCC GCCGGTACGC CCCTCGTCGA CCTGCTGATT
CCCGAATGGT CTGCCGCCCA GCTGGAGTTT CTGGCAGTGT TGCGTACTGC TGACACGCGC
TTGATAAGTG CGACTCAGGA GCGCCTGCGC TTGCTGGGCA TGCCCCAATC GTTGGTCGAG
CAGGTTCGTC GCAGCGGCCA GCCACGGGCG GTTCAGACCA TCACCACGCC AATCGCCGGC
GAGCTGCAGG CATTGGAAGT ACGTACCGGG ATGACCGTGG CAGCTGGCCA GGACCTGGCG
CGGATCAACG GGCTGTCCAC GGTCTGGCTC GATGCTGCAA TCCCCGAAGA CCAAGCTGGA
GCGGTTCAGC TTGGCGCGAG CATCACCGCC ACCCTGACCG CTTTCCCAGA ACAGCCTCTG
CAAGGTCGTG TCGTCGCCTT GCTGCCGAGT GCCGATCCGC AAACGCGCAC GCTCACGGTA
CGCAGCGAGC TACCCAACCC TGCCGGTAAG TTGCGCCCCG GCATGTTCGC CGCCGTACGC
CTGAACAGTG CCGTCGAACA ATCCACGCTT CTTGTGCCGA GTGAAGCCGT GATTCGCACC
GGGAAGCGTG CATTGGTGAT GCTGGCCGAA GGCGACGGAC GCTACCGTCC CCAGGAAATC
ACCTTGGGCC GCGAGGCCGA TGGGCGTCTG GAGGTGTTTT CCGGTCTTGA GGAAGGTCAG
GCGGTCGTTA CCTCCGGCCA GTTCCTGATC GACTCGGAGG CCAGCCTCCA GGGTGTCGTG
GCCAGCCATG CCAAGCAGGA CAATGCAAAG AAACTCCATG AGTCCCATGG CGTGATTCGT
GCCCTGGACG CCGAGGAGGT CACCCTGGAG CACGGTCCAT TCGAGAGCCT GAACATGCCC
GGCATGACCA TGGCATTTCC GCTGGCCAGC CCTGAAGTAG CTGCGGGACT CAAGCCTGGG
GATCACGTAC GCATCGGTGC TCGTCAGACG GACTCTGGCT TGGAAGTAGA GCGGCTCGAC
AAGCAAGGAG AGCTGCCATG A
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| Protein sequence | MKISALGFSA ALLTMGIAAA GGGYWLAERP AKHEVMPTPA PTDERKVLYW YDPMQPDQRF
DKPGKSPFMD MELVPKYADV GQDSSTLSVP SQAVQNLGMR TAPVTRGVLP SGIEAVGSLA
YNQREVANQQ ARAGGFVERV YGHAPGDVLP AGTPLVDLLI PEWSAAQLEF LAVLRTADTR
LISATQERLR LLGMPQSLVE QVRRSGQPRA VQTITTPIAG ELQALEVRTG MTVAAGQDLA
RINGLSTVWL DAAIPEDQAG AVQLGASITA TLTAFPEQPL QGRVVALLPS ADPQTRTLTV
RSELPNPAGK LRPGMFAAVR LNSAVEQSTL LVPSEAVIRT GKRALVMLAE GDGRYRPQEI
TLGREADGRL EVFSGLEEGQ AVVTSGQFLI DSEASLQGVV ASHAKQDNAK KLHESHGVIR
ALDAEEVTLE HGPFESLNMP GMTMAFPLAS PEVAAGLKPG DHVRIGARQT DSGLEVERLD
KQGELP
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