Gene Pmen_2196 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2196 
Symbol 
ID5109141 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2428775 
End bp2429782 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content68% 
IMG OID640503440 
ProductRNA procession exonuclease-like protein 
Protein accessionYP_001187688 
Protein GI146307223 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.260801 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.00381998 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGATCTGG TCGTTGCCCG TCCCGAAGGT CTTTACTGTC CGCCCGGTGA TTTCTACATC 
GATCCGTGGC GACCGGTGGA ACGCTCGATC ATCACCCATG CCCATGGTGA TCACGCCCGC
CGCGGCAATG GTCATTATCT GGCGGCGGCA CCCGGCGAAG GCATTCTGCG CTCGCGCCTG
GGCGACGATA TCCGTCTGCA GACCCTGGCC TACGGCGAAC GCCTCGAGCA CCACGGCGTA
ACCCTGAGCT TTCATCCCGC CGGGCACGTG CTCGGTTCGG CGCAGGTGCG TCTGGAATAC
CAGGGCGAAG TCTGGGTCGC CTCAGGTGAT TACAAGGTCG AGCCGGACGG CACCTGCGCA
CCCTTCGAGC CGGTGCGCTG TCATACCTTC ATCAGCGAAT CCACCTTCGG CCTGCCGATC
TACCGCTGGC CATCCCAGGC CGAGATCTTC GCCGGTATCG ACGCCTGGTG GCGCGCCAAT
GCCGCCGACG GCAAGGCCAG CGTGCTGTTC GCCTACGCCT TCGGCAAGGC CCAGCGCATT
CTCCACGGCA TCGACGCCAG CATCGGGCCG ATCCTGGTGC ACGGCGCCGT CGAGCCGCTG
AACGAGGTGT ATCGCGCCGG CGGCGTACAC CTGCCGCCAA CCCGTTACGC CGGTGATATC
GCCAGGAACG ACCCGCTGCT GCGCCAGGCG CTGATCCTCG CACCGCCCTC GGCCGGCGGC
AGCACCTGGA TGCGCCGTTT CGGCGACTAC AGCGACGCCT TCGCCAGCGG CTGGATGCTG
CTGCGCGGCA CGCGCCGGCG GCGTGGCGTG GACCGCGGCT TCGCCCTCTC CGACCACGCC
GACTGGCCCG GCCTGCTGTG GGCCATCGAG GAGACCGGCG CCGAACGGGT GATGGTCACC
CACGGCCAGG TCAACGTGCT GGTGCGTCAT CTGCGCGAGC AAGGCCTCGA TGCCCGTGCC
TTCCAGACCG AATACGGCGA TGAAGACGAC GTGGAGCCGA GCCCATGA
 
Protein sequence
MDLVVARPEG LYCPPGDFYI DPWRPVERSI ITHAHGDHAR RGNGHYLAAA PGEGILRSRL 
GDDIRLQTLA YGERLEHHGV TLSFHPAGHV LGSAQVRLEY QGEVWVASGD YKVEPDGTCA
PFEPVRCHTF ISESTFGLPI YRWPSQAEIF AGIDAWWRAN AADGKASVLF AYAFGKAQRI
LHGIDASIGP ILVHGAVEPL NEVYRAGGVH LPPTRYAGDI ARNDPLLRQA LILAPPSAGG
STWMRRFGDY SDAFASGWML LRGTRRRRGV DRGFALSDHA DWPGLLWAIE ETGAERVMVT
HGQVNVLVRH LREQGLDARA FQTEYGDEDD VEPSP