Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2196 |
Symbol | |
ID | 5109141 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2428775 |
End bp | 2429782 |
Gene Length | 1008 bp |
Protein Length | 335 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640503440 |
Product | RNA procession exonuclease-like protein |
Protein accession | YP_001187688 |
Protein GI | 146307223 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.260801 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.00381998 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGATCTGG TCGTTGCCCG TCCCGAAGGT CTTTACTGTC CGCCCGGTGA TTTCTACATC GATCCGTGGC GACCGGTGGA ACGCTCGATC ATCACCCATG CCCATGGTGA TCACGCCCGC CGCGGCAATG GTCATTATCT GGCGGCGGCA CCCGGCGAAG GCATTCTGCG CTCGCGCCTG GGCGACGATA TCCGTCTGCA GACCCTGGCC TACGGCGAAC GCCTCGAGCA CCACGGCGTA ACCCTGAGCT TTCATCCCGC CGGGCACGTG CTCGGTTCGG CGCAGGTGCG TCTGGAATAC CAGGGCGAAG TCTGGGTCGC CTCAGGTGAT TACAAGGTCG AGCCGGACGG CACCTGCGCA CCCTTCGAGC CGGTGCGCTG TCATACCTTC ATCAGCGAAT CCACCTTCGG CCTGCCGATC TACCGCTGGC CATCCCAGGC CGAGATCTTC GCCGGTATCG ACGCCTGGTG GCGCGCCAAT GCCGCCGACG GCAAGGCCAG CGTGCTGTTC GCCTACGCCT TCGGCAAGGC CCAGCGCATT CTCCACGGCA TCGACGCCAG CATCGGGCCG ATCCTGGTGC ACGGCGCCGT CGAGCCGCTG AACGAGGTGT ATCGCGCCGG CGGCGTACAC CTGCCGCCAA CCCGTTACGC CGGTGATATC GCCAGGAACG ACCCGCTGCT GCGCCAGGCG CTGATCCTCG CACCGCCCTC GGCCGGCGGC AGCACCTGGA TGCGCCGTTT CGGCGACTAC AGCGACGCCT TCGCCAGCGG CTGGATGCTG CTGCGCGGCA CGCGCCGGCG GCGTGGCGTG GACCGCGGCT TCGCCCTCTC CGACCACGCC GACTGGCCCG GCCTGCTGTG GGCCATCGAG GAGACCGGCG CCGAACGGGT GATGGTCACC CACGGCCAGG TCAACGTGCT GGTGCGTCAT CTGCGCGAGC AAGGCCTCGA TGCCCGTGCC TTCCAGACCG AATACGGCGA TGAAGACGAC GTGGAGCCGA GCCCATGA
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Protein sequence | MDLVVARPEG LYCPPGDFYI DPWRPVERSI ITHAHGDHAR RGNGHYLAAA PGEGILRSRL GDDIRLQTLA YGERLEHHGV TLSFHPAGHV LGSAQVRLEY QGEVWVASGD YKVEPDGTCA PFEPVRCHTF ISESTFGLPI YRWPSQAEIF AGIDAWWRAN AADGKASVLF AYAFGKAQRI LHGIDASIGP ILVHGAVEPL NEVYRAGGVH LPPTRYAGDI ARNDPLLRQA LILAPPSAGG STWMRRFGDY SDAFASGWML LRGTRRRRGV DRGFALSDHA DWPGLLWAIE ETGAERVMVT HGQVNVLVRH LREQGLDARA FQTEYGDEDD VEPSP
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