Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2190 |
Symbol | |
ID | 5109530 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2421403 |
End bp | 2422656 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640503434 |
Product | outer membrane porin |
Protein accession | YP_001187682 |
Protein GI | 146307217 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0522869 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.0043507 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCACAAGA AGCACTGTCT CGCGCTGGCC TGCAGCCTCG CGCTTGGCGG CCAGTTGGCT CATGCCAGCA GCCAGTCCGA AGCCCAGGGT TTCGTCGAGG ACGCCAGACT CAATCTGTTG CTGCGCAACG CCTACTTCCA CCGTGATTAC AAGGACAACG CCGCCGACGC CAAGACCTGG GGCCAGGCCT TCATCACCAC TTTCGAGTCC GGTTTCACCC AGGGCACCGT CGGCTTCGGT GTCGATGCCT TCGGCCTGCT CGGCATCAAG CTCGACAGCG GTCGCGGCCG CAACTATCGC CCATTCTTCG ATACTGACAG CGAAGGACGC CCAGTGGACG AACTGTCCCA GGCCGGTGCT GCGGTGAAGC TGCGCGTCTC CGATACCGTG ATCAGGTACG GCAACCAGTT CCCTTCCCTG CCGGTTCTGG CCCATGACGA CAGCCGCCTG CTGCCGCAAT CCTTCACCGG CACGCTGGTC ACCAGCAACG AGATCGAAGG TTTGGAACTG AATGCCGGTC GCTTCACCGC CGACAGCCCG ATGGGCGACT CGGCACGCGA CCCCAACCGC CTCAAGAGCA TCGACGTGCT CGGCGGCAGC TACACCCTTA GCGATGACCT GAGCCTGGCG GTCTACCACG CCGATCTCGA GGACATGTAC AAGCGCTACT ACGCCAACCT CAATTACAAC CTGGCACTGG CTGCGGATCA GGCGCTGAAC TTCGACTTCA ACATCTACCG CACCAAGTAC GACACCGGTT CGGTGGCCGC AATCGATCTC GGCGGCGATG GCCAGGGGGA CCGCAACACC ATCTGGAGCC TGGCGGCCAA GTACAGCATC GGCGCCCATG CCTTCATCGT CGCGCACCAG CGCAACAGCG GCGATGCCGG CTTCGCTTAT GACTACGGCG ATGGCGGCGC CAGCATCTAC CTGGCCAACT CCTACTACTC GGACTTCAAC CTGAAGGACG AGCGCTCCTG GCAGGCCAGC TACGAGCTGG ACTTCGCCCA GTACGGCGCG CCGGGGCTGC GCTACAAGTT CGCCTACGTA CGCGGCGACA ACATCGACAC CGGCAGCGAC AACAACGGCA CCGAGCGCGA GATCTTCAAC CAGGTCAGCT ACACCGTGCA AAGCGGTGCG GCCAAGGATC TGCACCTGCG TCTGCGCAAT TCCATCTACC GCTCCAGCAC CGATGTCGGC CCGGATCTCA ACGAGATTCG CGCCTTCATC GAATACCCGC TGAGCATCCT CTGA
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Protein sequence | MHKKHCLALA CSLALGGQLA HASSQSEAQG FVEDARLNLL LRNAYFHRDY KDNAADAKTW GQAFITTFES GFTQGTVGFG VDAFGLLGIK LDSGRGRNYR PFFDTDSEGR PVDELSQAGA AVKLRVSDTV IRYGNQFPSL PVLAHDDSRL LPQSFTGTLV TSNEIEGLEL NAGRFTADSP MGDSARDPNR LKSIDVLGGS YTLSDDLSLA VYHADLEDMY KRYYANLNYN LALAADQALN FDFNIYRTKY DTGSVAAIDL GGDGQGDRNT IWSLAAKYSI GAHAFIVAHQ RNSGDAGFAY DYGDGGASIY LANSYYSDFN LKDERSWQAS YELDFAQYGA PGLRYKFAYV RGDNIDTGSD NNGTEREIFN QVSYTVQSGA AKDLHLRLRN SIYRSSTDVG PDLNEIRAFI EYPLSIL
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