| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2184 |
|---|
| Symbol | |
|---|
| ID | 5109524 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2413296 |
|---|
| End bp | 2414318 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640503428 |
|---|
| Product | alcohol dehydrogenase |
|---|
| Protein accession | YP_001187676 |
|---|
| Protein GI | 146307211 |
|---|
| COG category | [C] Energy production and conversion
[R] General function prediction only |
|---|
| COG ID | [COG0604] NADPH:quinone reductase and related Zn-dependent oxidoreductases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.742883 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.0144783 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCGCA TGATCCGTTT CCATAAGTTC GGCGATGCCG AAGTACTCCA GTACGAGGAG
GTTCCAACGC CCGTGCCCGG CCCAGGAGAA GTGCTGGTGC GCGTGCAGGC CGTTGGCCTT
GGCTGGAAAG ACGTGCTGTG GCGGCAGAAC CTGGCGGCCG AGCAGGCCAA GCTCCCGTCG
GGCATCGGCT TCGAACTGGC CGGCAGCGTG GCCGCGCTGG GCGAAGGCGT CAGCGACTTC
GAAGTCGGCA CCGCCGTGGC CGGTTTCCCG GCCAGCACAC CGAATCGTTA TCCGACCTGG
GGTGATCTGG TGCTCATGCC CGCTCACGCC CTGACCCGTT ATCCCGACGT GCTCAGCCCG
GTCGAGGCCA GCGTTCATTA CACCAGCCTG TTGTTCGGCT ATCTGGCGCT GAATGATCTC
GCCCACCTCA AGCCGGGGCA GCACGTGCTG ATCACCGAGG CCAGCCATTG CATGGCGCCG
CAGACCGTGC AACTGGCCAA GGCGCTGGGC GCCAAGGTCA TCGTCTCCAC CGGCTCGGCC
GATGATCGCG AGTTTCTCCG CGGCCTCGGC GCCGACAAGG TGATCGTGAC CGAGGAGCAG
GACCTGGTTC TGGAGGTGGA GCGCTACACC GAAGGCAAGG GCGTCGAGAT CATCCTCGAC
CAGTGTGCCG GTCCGCAGAT GAAGCTGCTG GGCGACATCG CCGCGCCACG TGGCAAGCTG
ATCCTGTACG GGATCAACGG CGGCAACGAC ACGGCGTTCC CGGCTTGTGC GGCGTTCAAG
AAGCATCTGC AGTTCTTCCG TCACTGCGTG CTGGATTTCA CCGGTTGCCC GGAGCTGGGC
ATCGAGCCCA ACAACGAGGC CGTGCAGCGA GCGCTCACGC ACATCAACCA GATGACTGCC
GACCGTCTGC TGACGCCGGT GATCGACAAG GTCTTCGCTT TCGAGGACTT CGTCGCGGCT
CATCGCTACA TGGAAACCTG CCCGAATCGT GGGCGAGTGG CTCTGCAACT GGCCACGGAT
TAA
|
|---|
| Protein sequence | MSRMIRFHKF GDAEVLQYEE VPTPVPGPGE VLVRVQAVGL GWKDVLWRQN LAAEQAKLPS
GIGFELAGSV AALGEGVSDF EVGTAVAGFP ASTPNRYPTW GDLVLMPAHA LTRYPDVLSP
VEASVHYTSL LFGYLALNDL AHLKPGQHVL ITEASHCMAP QTVQLAKALG AKVIVSTGSA
DDREFLRGLG ADKVIVTEEQ DLVLEVERYT EGKGVEIILD QCAGPQMKLL GDIAAPRGKL
ILYGINGGND TAFPACAAFK KHLQFFRHCV LDFTGCPELG IEPNNEAVQR ALTHINQMTA
DRLLTPVIDK VFAFEDFVAA HRYMETCPNR GRVALQLATD
|
|---|
| |