| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2179 |
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| Symbol | |
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| ID | 5109519 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2404436 |
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| End bp | 2405824 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640503423 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001187671 |
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| Protein GI | 146307206 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.159854 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.0708517 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCCT TTGCCCCCGC CCTCCTGACC CTGGCGCTGT CGGCCTGCGC CGTCGGCCCG
GACTATCGAG CGCCCGTGAC CGAGCCTGCG CGCATTGCCG CGCTGGAGGC GGCCGATTAC
GACCGCAGCC GTTTCGAAGC CGCCTGGTGG CAGCAGTTCG ACGATCCGAC GCTGAACCAG
CTGGTGCAGC GTTCGCTGCA GGACAACCGC GAGCTGCGCG TGGCCTTCAA CCGCCTGCGT
GCCGCCCGGG CGATCCGCGA TGACGTGGCC AACGACCGCC TGCCCACCGT CACCAGCCGC
GCCAGCGGTG AGTTCGGCAA GGCGCAGCAG CCACCGGTCA GCGAGGAGCG CATCCGTCAG
GAGCGCTACG ACCTGGGCCT GGACATGGCC TGGGAGCTGG ACCTGTTCGG CCGCATCCAG
CGCCAGCTGG AAGCCAGCGA GGCGCGCATC GAAGTGGCCG AGGCCGACTA CTACCAGTTG
CAGGTCAGCC TGATCGCCGA GCTGGTCGAT GCCTACGGCA CCCTGCGTGG CGCACAGCTG
CGCGAAAGCA TTGCCCGCGA GAACCTGAAG AACCAGCAGG ACTCGCGTGG CATCACCGAA
CAGCTGCGCG ACGCCGGCGT CGGCAACGAA CTGGACGTGC TGCGCGCCGA TGCCCGCCTG
GCCGCCACCG AAGCCAGCCT GCCGCAACTG CAGGCGCAGC AGGTGCGCGC GCAGAACCGC
ATCGCCACCC TGCTCGGCCA GCGCCCGGAA CAGCTGCAGA TCGACCTGTC GCCCAAACCC
CTGCCGGTGA TCGCCAAGGC CTTGCCCATC GGCAACCCGA GCGAACTGCT GCGCCGTCGC
CCGGATATCC AGGCGGCCGA GCGGCAACTG GCGGCGGCCA CGGCCGAGGT CGGCGTGGCG
ACGGCGGATC TGTTTCCGCG GGTCAGCCTC TCCGGCTTTC TCGGCTTTAC CGCCGGGCGC
GGTTCGCAGC TGGGTTCGTC AGCAGCCCGC GCCTGGGGCG TAGCGCCGAG CATCAGCTGG
GCGGCCTTCG ACCTGGGCAG CGTACGAGCA CGCCTGCGCG GCGCCGAAGC CGAGGCCGAT
GGCGCGCTGT CGCAGTACGA ACAGCAGGTG CTGCTGGCGC TGGAAGAATC GGAAAACGCC
TTCAGCGACT ACGCCAAACG CCAGCAGCGC CTGGTTTCCC TGGTGCGCCA GGCCGAAGCC
AGCCGCGCGG CTGCCGACCA GGCGGCGATC CGTTATCGCG AAGGCACGGT GGACTTCCTC
GTTCTGCTGG ACGCCGAGCG CGAGCGCCTG GCCGCCGAAG ACGCCCAGGC CGCGGCCGAA
GTCGAGCTGT ACAGCGGCAT CGTCGCGATC TACAAGGCGC TCGGCGGCGG CTGGCAGCCA
CAGGCCTGA
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| Protein sequence | MKAFAPALLT LALSACAVGP DYRAPVTEPA RIAALEAADY DRSRFEAAWW QQFDDPTLNQ
LVQRSLQDNR ELRVAFNRLR AARAIRDDVA NDRLPTVTSR ASGEFGKAQQ PPVSEERIRQ
ERYDLGLDMA WELDLFGRIQ RQLEASEARI EVAEADYYQL QVSLIAELVD AYGTLRGAQL
RESIARENLK NQQDSRGITE QLRDAGVGNE LDVLRADARL AATEASLPQL QAQQVRAQNR
IATLLGQRPE QLQIDLSPKP LPVIAKALPI GNPSELLRRR PDIQAAERQL AAATAEVGVA
TADLFPRVSL SGFLGFTAGR GSQLGSSAAR AWGVAPSISW AAFDLGSVRA RLRGAEAEAD
GALSQYEQQV LLALEESENA FSDYAKRQQR LVSLVRQAEA SRAAADQAAI RYREGTVDFL
VLLDAERERL AAEDAQAAAE VELYSGIVAI YKALGGGWQP QA
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