| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2169 |
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| Symbol | |
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| ID | 5109509 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2396085 |
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| End bp | 2397320 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640503413 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001187661 |
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| Protein GI | 146307196 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00208914 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.0141278 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGGATG TCGTTTCCGT CGCATCCCGG CAATTACTGG TGGTCGAGCC GCTAGGCGCG
TGCGAACAAC TACTCCTTCC TCTGCAGGAG GCAGGTTGGG CGCTGCGCCG CGGCACACTG
CAGTCTCTGC AGGGCAGCTC CGGCGATGTG GTGCTGATTC ATTTGCACGA GCAGCCGCTG
GCGCCGCTGC TGGCTCAGCT GCGCAGCATG GAGGCCAGCT GGGTGGCGGT GCTGGATTCG
CAGACCCTGG AGCGGGGCGA GATCGCCGAA TTGATCGGCG AATGGTTCTT TGCTGCCCTG
GCGCTGCCCA CCGCCCCGGA AAATCTGATG GAAACGCTCT CGCAGGCGCA GGCGAACGCG
CGCCTGCGCA GCCTGCAGGG CGAGCGGCAG GCGCGGCAGT TTCTGGGCAA CAGCGCCCAG
GCGCGTACGC TGCGCAAGCA ACTGGAGCAG TTGAGCGAGG TGCCCAGGTC GCTGCTGATC
AGCGGCGAAC GCGGCAGCGG CAAGACGCTG CTGGCGCGCC TGGTGCATGA GCGCTCTTCA
CGCGCCGGCC ATGCCCTGCA GCGTCTGGAT TGCGCCGGGC AGGCCGAGGC GCTGTTCGAC
CGGCCCGGGC ATGCGGGTGC GCTGGCCGTG GCGGCGACAG GCACGCTGCT GCTCGAAGGC
CTGGCCACAT TGTCCGCGCC GACCCAGCAG CACCTGTTGC AGCATCTGCA GACCCATCCA
GGGCTGCACC TGATCAGCAT CAGTCGCGGC GAGCTGGAAG AGGCGGTGCG TCAGGGGCGC
TTTCGCGAGG ACCTCTATCG GATGCTCGCT GACGTGCGCT TGCAGACGCC CCGGCTACGC
GAGCAGCGCA GCGACATGCT GCTGCTGGCC GAGCATTTCG CCAAACTGCA TGGCGCGGTA
ATCGGGCGGC GGCATCGGCA TTTCAGCGAA GAAGCTGTCG ATGCCATGGT CGAACATGCC
TGGCCCGGCA ATGTGCGTGA GCTGTGCAAT CGGGTGATAC GGGCCCTGGT GCTCGCCCAG
GGACGGCAGA TTCTCGCGGG TGACCTGGGG CTCGAGGCCG GACGGGGGCA GGGCGCCGCG
GTGACCACGC TGCAGGACTA CATATTGCGG GCCGAGCGCC AGGCGTTGAA CGATGCCCTG
GCGCGCCATG CCAACAACAT GAGCCAGGCG GCCCGCACCC TGGGTATTTC CCGCCCGACC
TTCTACCGGC TGCTGCACAA GCATCGCCTG CGCTGA
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| Protein sequence | MLDVVSVASR QLLVVEPLGA CEQLLLPLQE AGWALRRGTL QSLQGSSGDV VLIHLHEQPL
APLLAQLRSM EASWVAVLDS QTLERGEIAE LIGEWFFAAL ALPTAPENLM ETLSQAQANA
RLRSLQGERQ ARQFLGNSAQ ARTLRKQLEQ LSEVPRSLLI SGERGSGKTL LARLVHERSS
RAGHALQRLD CAGQAEALFD RPGHAGALAV AATGTLLLEG LATLSAPTQQ HLLQHLQTHP
GLHLISISRG ELEEAVRQGR FREDLYRMLA DVRLQTPRLR EQRSDMLLLA EHFAKLHGAV
IGRRHRHFSE EAVDAMVEHA WPGNVRELCN RVIRALVLAQ GRQILAGDLG LEAGRGQGAA
VTTLQDYILR AERQALNDAL ARHANNMSQA ARTLGISRPT FYRLLHKHRL R
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