| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2159 |
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| Symbol | metH |
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| ID | 5109499 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2382098 |
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| End bp | 2385808 |
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| Gene Length | 3711 bp |
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| Protein Length | 1236 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640503403 |
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| Product | B12-dependent methionine synthase |
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| Protein accession | YP_001187651 |
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| Protein GI | 146307186 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.088857 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGATC GCAGCGCCCG CCTCCAAGCC CTCCAGCAAG CCCTGAAGGA GCGCATCCTG
ATCCTCGACG GCGGCATGGG CACCATGATC CAGAGCTACA AGCTGGAAGA GGCCGACTAC
CGCGGCGAGC GCTTCGCCGA CTGGCCGAGC GACGTCAAGG GCAACAACGA CCTGCTGCTG
CTGACCCAGC CGCAGATCAT CGCCGCCATC GAAAAGGCCT ATCTGGATGC CGGCGCCGAC
ATCCTGGAAA CCAACACCTT CAACGCCACC CGCGTGTCGC AGGCCGACTA CGATATGGAG
GAACTGGTCT ACGAGCTGAA CCTGGCCGGC GCCCGTGTCG CCCGTGAAGT GGCTGACGCC
AAGACCCTGG AAACCCCGGA TCGCCCGCGC TTCGTCGCCG GCGTTCTAGG CCCGACCAGC
CGCACCTGCT CGATCTCCCC GGACGTCAAC GACCCCGGTT ACCGCAACGT CACCTTCGAC
GAACTGGTGG AGAACTACAC CGAGGCCACC CGCGGCCTGA TCGAGGGCGG CGCCGACCTG
ATCCTGATCG AGACCATCTT CGACACCCTG AACGCCAAGG CGGCGATCTT CGCCGTGCAG
CAGGTGTTCG AGGAAGACGG CATCGAGCTG CCGATCATGA TCTCCGGCAC CATCACCGAC
GCTTCCGGCC GCACCCTGTC CGGCCAGACC ACCGAGGCGT TCTGGAACTC GGTGCGCCAC
GCCAAGCCGA TTTCCGTGGG GCTGAACTGC GCCCTCGGCG CCAAGGACCT GCGCCCATAC
CTGGAAGAGC TGGCCAACAA GGCCGACACC CATGTGTCCG CCCACCCCAA CGCCGGCCTG
CCCAACGCCT TCGGCGAATA CGACGAGTCG CCCGCCGAGA TGGCGGCGGT AGTCGAAGAA
TTCGCCGCCT CAGGTTTCCT CAACATCATC GGCGGTTGCT GCGGCACCAC CCCGGCGCAT
ATCCAGGCGA TCGCCGAGGC GGTGGCCAAA TACCCGCCGC GCGTGATCCC GGACATTCCC
AAGGCCTGTC GCCTGTCGGG CCTGGAGCCC TTCACCATCG ACCGCAACTC GCTGTTCGTG
AACGTCGGTG AGCGCACCAA CATCACCGGC AGCGCCAAGT TCGCCCGCCT GATCCGCGAG
GAGAACTACA CCGAGGCCCT GGAAGTCGCC CTGCAGCAGG TGGAAGCCGG CGCCCAGGTG
ATCGACATCA ACATGGACGA AGGCATGCTG GACTCCAAGG CCGCCATGGT CAGGTTCCTC
AACCTGATCG CCGGCGAGCC GGACATCTCC CGCGTGCCGA TCATGATCGA CTCCTCCAAG
TGGGAGGTGA TCGAAGCCGG CCTGAAATGC ATTCAGGGCA AGGGCATCGT CAACTCCATC
TCCATGAAGG AAGGCGTCGA GCAGTTCAAG CACCACGCCC GCCTCTGCAA GCGCTACGGC
GCCGCCGTGG TGGTGATGGC CTTCGACGAG GTCGGCCAGG CCGACACCGC CGCGCGCAAG
AAGGAAATCT GCCAGCGCAG CTACGACATC CTGGTCAATG AAGTGGGCTT CCCGCCGGAA
GACATCATCT TCGACCCGAA TATCTTCGCC GTGGCCACCG GCATCGAGGA GCACAACAAC
TACGCGGTGG ACTTCATCGA AGCCTGCGCC TATATCCGTG AGCATCTACC ATTCGCCCTA
TCGAGTGGCG GCGTGTCCAA CGTGTCGTTC TCCTTCCGCG GCAACAACCC GGTGCGCGAA
GCAATCCACT CGGTGTTCCT CTACTACGCG ATCCAGAACG GCCTGACCAT GGGCATCGTC
AACGCCGGCC AGCTGGAGAT CTACGACGAG ATTCCCAAGG AGCTGCGCGA CGCGGTCGAG
GACGTGGTGC TCAACCGCAA TGACGGCGCC ACCGAGGCGC TGCTGGCCAT CGCCGACAAG
TACAAGGGCG ACGGCGCCGC CAAGGAAGTC GAGAACGAGG AATGGCGCTC GCTGCCGGTG
GACAAGCGCC TGGAACACGC GCTGGTCAAG GGCATCACCG CCTTCATCGT CGAAGACACC
GAAGAGTGCC GTCAGCAGTG CGCGCGCCCC ATCGAGGTGA TCGAAGGCCC GCTGATGGCC
GGCATGAACG TGGTCGGCGA CCTGTTCGGC TCGGGCAAGA TGTTCCTGCC CCAGGTGGTC
AAGTCCGCAC GGGTGATGAA GCAGGCCGTG GCGCACCTGA TCCCCTTCAT CGAAGCCGAG
AAAGGCGACA AGCCGGAGGC CAAGGGCAAG ATCCTCATGG CCACGGTCAA GGGCGATGTG
CACGACATCG GCAAGAATAT CGTCGGCGTT GTTCTTGGGT GTAATGGCTA CGATATCGTC
GACCTGGGCG TGATGGTGCC GGCGGAGAAG ATCCTGCAGA CCGCCCGCGA CGAGAAATGC
GACATCATCG GCCTGTCCGG GCTGATCACC CCATCGCTGG ACGAAATGGT CCACGTCGCC
AAGGAAATGC AGCGCCAGGG CTTTACCCTG CCGTTGATGA TCGGCGGCGC CACCACCTCC
AAGGCGCACA CGGCGGTGAA GATCGACCCG CAGTACAGCA ACGACGCCGT GGTCTACGTC
ACCGACGCCT CGCGCGCCGT GGGCGTGGCC ACCCAGCTGC TGTCCAAGGA GCTGAAGGCC
GACTTCGTGC AGAAGACCCG CGAGGAGTAC GTGGTGGTGC GCGAGCGCAC CTCGGCACGC
GCCTCGCGCA CCGAGCGCCT GGGCTATGCC GATGCCATCG CCAACAAGCC GGCCTTCGAC
TGGAACGGCT ACATCGCGCC CAAACCGAGC TTTACCGGTG CCCAGGTGCT GGACGACATC
GACCTGGCGA CCCTGGCCGA ATACATCGAC TGGACGCCCT TCTTCATCTC CTGGGACCTG
GCCGGCAAAT ACCCGCGCAT CCTCACCGAC GAGATCGTCG GCGAAGCGGC CACCAGCCTG
TTCAACGACG CCCAGGCGAT GCTGAAGAAG CTGATCGACG AGAAGCTGAT CAGGGCCCGT
GCCGTCTTCG GCTTCTGGCC GGCCAACCAG GTCGCTCATG ACGACATCGA AGTCTACGGC
GACGACGGCA AGCCCCTGGC CAAGCTGCAT CACCTGCGCC AGCAAACCAT CAAGCCCGAC
GGCAAGCCGA ACCTGTCGCT GGCCGATTTC GTCGCGCCCA AGGAAAGCGG CGTGACCGAC
TACGTGGGCG GCTTCATCAC CACCGCCGGC ATCGGCGCCG AGGAACTGGC CAAGGCCTAT
GAGGCCAATG GCGACGATTA CAACTCGATC ATGGTCAAGG CCCTGGCCGA CCGCCTGGCC
GAGGCCTGCG CCGAGTGGCT GCACGAGCGG GTGCGCAAGG AGTACTGGGG CTACGCAGCG
GACGAGCAAC TGGACAACGA GGCGCTGATC CGCGAGCAGT ACAAGGGCAT CCGCCCTGCC
CCTGGCTACC CGGCCTGCCC GGATCACACC GAGAAGGCCA CGCTGTTCAA GCTGCTCGAC
CCCGAGGCCG ACTACAACAA GGCCGGCCGC AGCGGTGTGT TCCTCACCGA GCACTACGCC
ATGTTCCCGG CGGCAGCCGT GTCCGGCTGG TACTTCGCTC ACCCCGAGGC GCAGTACTTC
GCCGTGGGCA AGGTCGACAA GGATCAGATC GAGCAGTACA GCAAGCGCAA GGGTCAGGAC
ATCGCCGTCA GCGAACGCTG GCTGGCGCCG AACCTCGGCT ACGACGACTG A
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| Protein sequence | MSDRSARLQA LQQALKERIL ILDGGMGTMI QSYKLEEADY RGERFADWPS DVKGNNDLLL
LTQPQIIAAI EKAYLDAGAD ILETNTFNAT RVSQADYDME ELVYELNLAG ARVAREVADA
KTLETPDRPR FVAGVLGPTS RTCSISPDVN DPGYRNVTFD ELVENYTEAT RGLIEGGADL
ILIETIFDTL NAKAAIFAVQ QVFEEDGIEL PIMISGTITD ASGRTLSGQT TEAFWNSVRH
AKPISVGLNC ALGAKDLRPY LEELANKADT HVSAHPNAGL PNAFGEYDES PAEMAAVVEE
FAASGFLNII GGCCGTTPAH IQAIAEAVAK YPPRVIPDIP KACRLSGLEP FTIDRNSLFV
NVGERTNITG SAKFARLIRE ENYTEALEVA LQQVEAGAQV IDINMDEGML DSKAAMVRFL
NLIAGEPDIS RVPIMIDSSK WEVIEAGLKC IQGKGIVNSI SMKEGVEQFK HHARLCKRYG
AAVVVMAFDE VGQADTAARK KEICQRSYDI LVNEVGFPPE DIIFDPNIFA VATGIEEHNN
YAVDFIEACA YIREHLPFAL SSGGVSNVSF SFRGNNPVRE AIHSVFLYYA IQNGLTMGIV
NAGQLEIYDE IPKELRDAVE DVVLNRNDGA TEALLAIADK YKGDGAAKEV ENEEWRSLPV
DKRLEHALVK GITAFIVEDT EECRQQCARP IEVIEGPLMA GMNVVGDLFG SGKMFLPQVV
KSARVMKQAV AHLIPFIEAE KGDKPEAKGK ILMATVKGDV HDIGKNIVGV VLGCNGYDIV
DLGVMVPAEK ILQTARDEKC DIIGLSGLIT PSLDEMVHVA KEMQRQGFTL PLMIGGATTS
KAHTAVKIDP QYSNDAVVYV TDASRAVGVA TQLLSKELKA DFVQKTREEY VVVRERTSAR
ASRTERLGYA DAIANKPAFD WNGYIAPKPS FTGAQVLDDI DLATLAEYID WTPFFISWDL
AGKYPRILTD EIVGEAATSL FNDAQAMLKK LIDEKLIRAR AVFGFWPANQ VAHDDIEVYG
DDGKPLAKLH HLRQQTIKPD GKPNLSLADF VAPKESGVTD YVGGFITTAG IGAEELAKAY
EANGDDYNSI MVKALADRLA EACAEWLHER VRKEYWGYAA DEQLDNEALI REQYKGIRPA
PGYPACPDHT EKATLFKLLD PEADYNKAGR SGVFLTEHYA MFPAAAVSGW YFAHPEAQYF
AVGKVDKDQI EQYSKRKGQD IAVSERWLAP NLGYDD
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