| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2151 |
|---|
| Symbol | |
|---|
| ID | 5109491 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2371275 |
|---|
| End bp | 2374493 |
|---|
| Gene Length | 3219 bp |
|---|
| Protein Length | 1072 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640503395 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001187643 |
|---|
| Protein GI | 146307178 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.439713 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.242332 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAGAC CGTTACCCCG CGCGCTCGGT GAGGCACTCG GTGCGCTGGT TCGCCAGTAT
CTGCCTGATG CGCTGCGGCA ACTCTGTCTG GCACTGGAGC AGGCGCTGGC AGAGCAGCGC
TTGCGCGCCT TTTCCAATGA AGAGGCGCAG GCCTGCGAGC ATTTCATGCG CTTTTGCCGC
AATCAGCAGG AGCGCGCCAT CGCCAGCTGC GTGCAGCGCA TCTGCGGGGG GCTGCTGGCT
CTTCCGGAGC AGGCCGCCGT GCTCGACAGT CGCAGCGAGT GGAGCCTGGT GGACGATGAG
GAAGTCGACG ACATGCTGCT TGCGCGGCGC CTGGTGCGCA CCTTGCGCGA AAGCCTCGGG
GTACGTGAGT GGCGGGTCTG CGGCTGTTTC AACCGTCTGG CCGGCGAGCC TCTGGCCGAT
GCGGACAACC CCCTGTCGTT CGAATTTCTC CTGCGTCAGC TGCAGGCCGA GCTACGCCTG
CGCAATCAAC CGCTCGGCGT GCGCGCCCTC TACCTGAGCG AAGCCGGCCG CCTGCTGCCG
GACTTGCTGC AGCCTTACAT GCAGGCGCTG GTCGAGCAGT TCGCCGCACA GCGGATCGAG
CCGCTCAGCG CCGAACTTGC GCCAGCGCGT GCCCACAAGA CGCCGCCACG GGCCGAGGCG
GCGTCCGCCA CCTATCAGGC CATCCAGCAA CTGCGGCGCA GCCAGCCTGC AGCATCGCCG
CCCTCCCAGG CGGCCCAGAC GCATGGCGAG ATCCCCGCGG CACTGCTCGG TCGCTTGCGC
AGCCAGCCGG TGCCGAGCGG TGGCTGGACG GCGCAGGCAC TGCTCGAGCA ATTTCGGCAA
CAGGACTGTG CCCTCAGCTT GCGCCAGCAG GAGGACACCC AACTGGTGAC CGAGGTGTTC
CAGCATCTGA CACAAGATGA CGGCCTGGCG CCGGCGCTCA AACCAGGCAT CGAGCGCCTG
CTGCTGCCGG TATTGCAGGC GATGCTGAAA GAGCCGGCCG CCCTGGCCGA CAGCAATCAC
CCGGTGCGTG CCACCCTGGA TCGTGTGCTG CGCCTGGGTG ATCACTGCGA ACCGGCCAAC
CCCGCGCTGG AAGGCCGGGT GCACGAGGTG ATCGAACAGA TCATCGCCGG CTATGACGGT
GACAGCCGGA GCTTCGCCGT GCACGCCGCG GAGCTGGACG AACTGATCGA CCAGCAGCAG
CGCAGCTATC GGCAGAATGC CGAGCGGGTC AAGCAATTGC ACAAGGGCCA GGACACCCTC
AAACAGGCCC AGCGGGAGCT TGCCGACGCG CTGCGGGAGC TGCATGGCGA GGAGAGCGTG
CCCAGGTTGT TGCTGGAGTG GTTGGACGCC GGCTGGCGCG ACCTGCTGGT GCATGAACTG
ATCCGCCTGG GCCGACAGAA CCTGACCTGG CGCCTGGACA TGTCCCTGAC CGGGATGCTC
TGTACGCGCC TCAACGAACG GGCCAAGGAG CCTTTTCGCG GCGATCCCGA GGCCTATGCC
GCGGAGGTCG AGCATCAGCT GCAGGTGCTC AAACGGCGCA TGGAGGCCTT TGGTGCCGGC
AGCTTCCAGT ACGGCCCGGT GTTGGCCAGA TTGCGTAAAC AGTTGCTCGG TGAGGAGCCC
GTGCAGCTGG CGGCCCCAGA GCATCTGCCA GGGGCCCGGC CGGTGCTGGC AGACGAACTG
CAGCGCTGGG GTGAGCGCCT GGAGCAGCTC GATGAGGGGG CTCGCCTGCA GGATGCGAAC
GGCCAGGTGC ATCGCCTGGT GTGGAAGAAT CCGGCGATGG ATCACTACGT GCTGGTCGAT
CGTCAGGGCC GCGAGAGTGG ATGTTTTACC GAGCAGGCGC TGGTCGCCGA GCTGGCCAGC
GGACAGTTGC TGATAGAGGA GGGCAGTCGC GATTCCGACA GCCTGGTGCA AAGAACCCTG
CAGGACATAG TCGGGCGCCT GTACCGCGAG GTCGCCCATG CCCGCAGTCA TGACGAGCTG
ACCGGTCTGC ACAACCGCCG CGCTTTCGAG TCCGCGCTTG CGCAGAGCCT GGCCAGCCGC
AGTCGGCACG CCTTCCTCAT GCTGCACCTC GACCAGTTCG CCCTGATCAA TACCCACTCC
GGGCCGCATG CCGGCGACGC CTGTCTCGGT CGCGTCAGCG AACTGCTGCG GCGCTGGTTG
CCTCAGGCCA GCTGCCTGGC ACGGGTCGGC GGGGTGGATT TCGCGGCGGT GTTGCCCGGT
TGCAACGAAG CCCAGGCAGC GGATCTGGCC GAGCAGGTGC GCCGCGAAGT GGAGAGCGAG
GGCTTCGTCT GGGAAACGCG CAAGCATGGC ATCACGCTCA GCGTCGGGGT GGTCGAGGCG
GCGCAGCGGC ATGATGTCGC CAATCTGTTC TGCGAACTGC AATCGGCCTG CAACGCCGCC
AAGGAAGCCG GGCGCAATCG CGTGCACTGC TTCAGCATGG CCAGTGACGA CAGTCGCATC
GGCCTGCTGG CCATTGCTGC GCGGGTCGAC GACATCGTCG AGCGCGAGGA CCTGGCGCTG
CGCGTGCAGC AGATCGCGCC GACGGCAGGA CAATCCAGCG AGCTGCCGCA CTACGAGCTG
CTGCTGGTGA TGCAGAACGA ATTGCAACTG CAGGACTTCA TCGCGGCCGC GGAACGCTAT
CACCGCATGA ACAAGGTCGA TCGCTGGGTG TTGCGCCACA TCTTCGCCGT GCTCGATCGA
CATCCTGACC TCTGGGGCCG CTGCAGTGCG CTGTCGATCA ATCTGTCCGG TAGCAGCCTG
AACGACGACA AGCTGCTGGG GTTCATCGAG AGCCTGTTCG AGCGCTACCG GGTCGACCCG
CGGCGCATCT GCTTCGAGCT GACCGAAACG GCGGCGGTCT CCAACCTGGC CAAGACCGCC
GATCTGGTGC GCCACCTGCA GCGCGCTGGG TGCAGTTTTT CGATCGATGA CTTCGGCGTG
GGCTTCTCCA GCTACGACTA CCTCAAGCGC CTGCCAGTGG ATTACGTGAA GATCGACGGC
AGCTTCGTCA GGGAGATCGA GCGCTCCTCC AGCGATCTGG CCATGGTTCG CTCGATCAAC
GAGATCGCCC ACGCCCTGGG GCGGCAGACC ATCGCCGAAT ACGTTGAAAC GCCTGCCATC
CGCGCGCGTC TGCTGGAAAT GGGGGTGGAT TACGTGCAGG GATATGGCGT GCAGAAGCCC
GTGAGCCTGG AGGACTGGCT CGGCGTGGCG GCGCTTTGA
|
|---|
| Protein sequence | MPRPLPRALG EALGALVRQY LPDALRQLCL ALEQALAEQR LRAFSNEEAQ ACEHFMRFCR
NQQERAIASC VQRICGGLLA LPEQAAVLDS RSEWSLVDDE EVDDMLLARR LVRTLRESLG
VREWRVCGCF NRLAGEPLAD ADNPLSFEFL LRQLQAELRL RNQPLGVRAL YLSEAGRLLP
DLLQPYMQAL VEQFAAQRIE PLSAELAPAR AHKTPPRAEA ASATYQAIQQ LRRSQPAASP
PSQAAQTHGE IPAALLGRLR SQPVPSGGWT AQALLEQFRQ QDCALSLRQQ EDTQLVTEVF
QHLTQDDGLA PALKPGIERL LLPVLQAMLK EPAALADSNH PVRATLDRVL RLGDHCEPAN
PALEGRVHEV IEQIIAGYDG DSRSFAVHAA ELDELIDQQQ RSYRQNAERV KQLHKGQDTL
KQAQRELADA LRELHGEESV PRLLLEWLDA GWRDLLVHEL IRLGRQNLTW RLDMSLTGML
CTRLNERAKE PFRGDPEAYA AEVEHQLQVL KRRMEAFGAG SFQYGPVLAR LRKQLLGEEP
VQLAAPEHLP GARPVLADEL QRWGERLEQL DEGARLQDAN GQVHRLVWKN PAMDHYVLVD
RQGRESGCFT EQALVAELAS GQLLIEEGSR DSDSLVQRTL QDIVGRLYRE VAHARSHDEL
TGLHNRRAFE SALAQSLASR SRHAFLMLHL DQFALINTHS GPHAGDACLG RVSELLRRWL
PQASCLARVG GVDFAAVLPG CNEAQAADLA EQVRREVESE GFVWETRKHG ITLSVGVVEA
AQRHDVANLF CELQSACNAA KEAGRNRVHC FSMASDDSRI GLLAIAARVD DIVEREDLAL
RVQQIAPTAG QSSELPHYEL LLVMQNELQL QDFIAAAERY HRMNKVDRWV LRHIFAVLDR
HPDLWGRCSA LSINLSGSSL NDDKLLGFIE SLFERYRVDP RRICFELTET AAVSNLAKTA
DLVRHLQRAG CSFSIDDFGV GFSSYDYLKR LPVDYVKIDG SFVREIERSS SDLAMVRSIN
EIAHALGRQT IAEYVETPAI RARLLEMGVD YVQGYGVQKP VSLEDWLGVA AL
|
|---|
| |