| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2144 |
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| Symbol | |
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| ID | 5109484 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2364939 |
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| End bp | 2366621 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640503388 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001187636 |
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| Protein GI | 146307171 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.101709 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.616746 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCAGG AAATCGGCGG CTTCGCCGCG CTCGGACTTC ATCCCAATAT TCTCGCCGCT
CTGACCGCCG TCGGTTACGA AGAGCCGTCT CCGATCCAGT CGCAGGCCAT TCCGGTGATC
CTCGCCGGCC ACGACATGAT CGGCCAGGCG CAGACCGGTA CCGGCAAGAC CGCCGCCTTC
GCCCTGCCGC TGCTGAGCAA GATCGACCCG GCCAAGCGCG AGCCGCAGGT GCTGATCCTC
GCACCGACCC GCGAGCTGGC CCTGCAGGTG GCCACCGCCT TCGAAACCTA TTCCAAGCAG
ATGCCGGGCG TGAACGTCGT CGCCGTCTAC GGCGGCGCGC CGATGGGCCC GCAGCTCAAG
GCCCTGCGCA TGGGCGCACA GATCATCGTG GCCACGCCGG GCCGTCTGGT CGACCACCTG
CGTCGTGACG ACAAGGTGCT GTCCACCATT CAGCACCTGG TGCTGGACGA AGCCGACGAG
ATGCTCAAGC TGGGTTTCAT GGATGATCTG GAAATCATCT TCGAAGCCAT GCCGGAAAGC
CGCCAGAGCG TGCTGTTCTC CGCCACGCTG CCGCATTCGA TCCGCGCCAT CGCCGAGAAG
CATCTGCGCG AGCCGCAGCA CATCAAGATC GCGGCCAAGA CCCAGACCGT CTCGCGCATC
GAGCAGGCGC ACCTGATGAT CCACGCCGAC CAGAAGACCA ACGCCGTGTT GCGTCTGCTG
GAGGTCGAAG ATTTCGACGC GCTGATCGCC TTCGTGCGCA CCAAGCAGGC CACTCTGGAC
CTGGCCTCCG CGCTGGAAGC CAAGGGCTTC AAGGCCGCTG CGCTGAACGG TGATATCGCC
CAGAACCAGC GTGAGCGCGT GATCGAGTCG CTCAAGGACG GCCGTCTGGA CATCGTCGTC
GCCACCGACG TCGCCGCCCG TGGTATCGAC GTGCCGCGCA TCACCCACGT GTTCAACGTC
GACATGCCGT ACGACCCGGA ATCCTACGTG CACCGTATCG GCCGTACCGG CCGCGCCGGT
CGCGATGGCC GTGCGCTGCT GCTGGTGACC CCGCGCGAGC GCCGCATGCT GCAGGTGATT
GAGCGTGTCA CCGGGCAGAA GGTGGGCGAG GTCAAGCTGC CGAACGCCCA GCAGGTGCTC
GATGCCCGTA TCAAGAAGCT GACCAGCAGC CTGGCGCCGC TGGTCGCGGA CGCCGAAGCC
AGCCATGGCG AACTGCTCGA CCGCCTGACC GCCGACATCG GCTGCAGCCC GCGCGCCCTG
GCCGCCGCGC TGCTGAAGAA GGCCACCAAC GGTCAGGCGC TGGATCTGGC CAGCGTCGAG
CGCGAGCAGC CGCTGGTGCC GGGTGTTGGT GGTGCGCCGC GTGAGCGCCG CGAGCGTGAT
GGTGATCGTG GCGGCGAGCG CGGTGAATAC CGCGAGCGTC GTGCGCCGCT GCCGCTGGCC
GAGGGTCGTG TACGCTGCCG TACCGCGCTG GGCACTCGCG ACGGCATCGC CGCGAAGAAC
CTGCTCGGCG CCATCCTCAA CGAGGGCGGC CTGGCGCGCG AAGCCATCGG TCGCATCCAG
ATCCGCGAGA CCTTCAGTCT GGTCGAGCTG CCGGAAGATG GTCTGGACCG TCTGCTCGGC
AAGCTGAAGG ACACCCGCGT GGCCGGCAAG GCGCTGAAAC TGCGTCGCTA CCGCGAGGAT
TGA
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| Protein sequence | MTQEIGGFAA LGLHPNILAA LTAVGYEEPS PIQSQAIPVI LAGHDMIGQA QTGTGKTAAF
ALPLLSKIDP AKREPQVLIL APTRELALQV ATAFETYSKQ MPGVNVVAVY GGAPMGPQLK
ALRMGAQIIV ATPGRLVDHL RRDDKVLSTI QHLVLDEADE MLKLGFMDDL EIIFEAMPES
RQSVLFSATL PHSIRAIAEK HLREPQHIKI AAKTQTVSRI EQAHLMIHAD QKTNAVLRLL
EVEDFDALIA FVRTKQATLD LASALEAKGF KAAALNGDIA QNQRERVIES LKDGRLDIVV
ATDVAARGID VPRITHVFNV DMPYDPESYV HRIGRTGRAG RDGRALLLVT PRERRMLQVI
ERVTGQKVGE VKLPNAQQVL DARIKKLTSS LAPLVADAEA SHGELLDRLT ADIGCSPRAL
AAALLKKATN GQALDLASVE REQPLVPGVG GAPRERRERD GDRGGERGEY RERRAPLPLA
EGRVRCRTAL GTRDGIAAKN LLGAILNEGG LAREAIGRIQ IRETFSLVEL PEDGLDRLLG
KLKDTRVAGK ALKLRRYRED
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