| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2105 |
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| Symbol | |
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| ID | 5109839 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2334399 |
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| End bp | 2335682 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640503349 |
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| Product | ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein |
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| Protein accession | YP_001187598 |
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| Protein GI | 146307133 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.187135 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.00370566 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACTGATC GTGATTCGAA CAAGCCGCTG GACACCAGCC GCCGCAACTT CCTCAAGCAA
TCCATCGCCC TGGCCGGCGC CGTGAGCGGT ATCGCCGCAC TCGGCCTGTC CGCACCCGCT
TCGCTGCGCA GCGCGGCCTG GGCCGCCGGC TCCGATGCGC CAGAGAAGGC CGCGCTGACG
GTCGGCTTCA TTCCCCTGAC CGATTGCGCC TCGGTGGTGG TGGCTGCGAC ACAGGGTTTC
GGCGAGAAAT ACGGCCTGAC CATCAACCCG AGCAAGGAGG CCTCCTGGGC CGGCGTGCGC
GACAAGCTCA ACACCGGCGA ACTGGACGCT GCCCACGTGC TTTACGGCAT GATGTACGGC
GCCCAGCTCG GCCTGGCCGG CCCGCAGAAG GACATGGCGG TGCTGATGGG CCTGAACCAG
AACGGCCAGG CCATCACCCT TTCCAAGCAG TTACGCGACG CCGGTGTGAC CAACGGCGCG
CAGCTGGCCG AGCACGTGAA GAAAGGCGGC ACGCCGCTGA CCTTCGCCCA GACCTTCCCC
ACCGGCACCC ACGCCATGTG GCTGTACTAC TGGCTCGCCA GCCTGGGCAT CAACCCCATG
AGCGACGTGA AGACCATCGT CGTGCCGCCA CCGCAGATGG TCGCCAACAT GCGCGTCGGC
AACATGGACG GCTTCTGCGT CGGCGAGCCC TGGGGCGCGC GGGCGATCTT CGACAAGATC
GGCTTCACCG CCACCACCAC CCAGCAGATC TGGCCGGACC ACCCGGAGAA GGTGCTCGGC
ACCACCCGCG CCTTTATCGA GCAGTATCCC AACGCGGCGC GCGCGCTGAT CATGGCGATT
CTCGATGCCA GCCGCTTCAT CGAGGCCAGC GAGGAGAACC GCAAGAGCAC CGCCAAGCTG
ATTTCCGGCA AGGCCTACGT CAACGCCCCG GTGCAGGTGA TCGAGCCACG CTTCCTCGCC
CAGTATGAAG ACGGTCTGGG CAACAGCTGG AAGGACGAAC ACGCCATGGC CTTCTGCAAG
GACGGCAGCG TCAACTTCCC CTATCACTCC GACGGCATGT GGTTCCTCAC CCAGTTCAAG
CGCTGGGGCC TGCTCAAGGA CGCACCGGAT TACGCCGCCG TGGCTGCGCA GATCAACCAG
ACCGCGCTCT ACGCTGAGGC CGCCGGCGCG CTGAAACTGG CGGTGCCGAG CAGCCCGCTG
CGCAGCAGCA CACTGCTCGA CGGTGTGGTC TGGGACGGCA GCAACCCGGC AGCCTACGCC
AACTCCTTCG CCATCAAAGC CTGA
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| Protein sequence | MTDRDSNKPL DTSRRNFLKQ SIALAGAVSG IAALGLSAPA SLRSAAWAAG SDAPEKAALT
VGFIPLTDCA SVVVAATQGF GEKYGLTINP SKEASWAGVR DKLNTGELDA AHVLYGMMYG
AQLGLAGPQK DMAVLMGLNQ NGQAITLSKQ LRDAGVTNGA QLAEHVKKGG TPLTFAQTFP
TGTHAMWLYY WLASLGINPM SDVKTIVVPP PQMVANMRVG NMDGFCVGEP WGARAIFDKI
GFTATTTQQI WPDHPEKVLG TTRAFIEQYP NAARALIMAI LDASRFIEAS EENRKSTAKL
ISGKAYVNAP VQVIEPRFLA QYEDGLGNSW KDEHAMAFCK DGSVNFPYHS DGMWFLTQFK
RWGLLKDAPD YAAVAAQINQ TALYAEAAGA LKLAVPSSPL RSSTLLDGVV WDGSNPAAYA
NSFAIKA
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