Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2103 |
Symbol | |
ID | 5109837 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2332626 |
End bp | 2333417 |
Gene Length | 792 bp |
Protein Length | 263 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640503347 |
Product | nitrate ABC transporter, ATPase subunits C and D |
Protein accession | YP_001187596 |
Protein GI | 146307131 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
TIGRFAM ID | [TIGR01184] nitrate transport ATP-binding subunits C and D |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.0097031 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.0581699 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACAAGT TCGTGGAGCT GACCGCCGTC AGCAAGCACT TCGACACCAA GAAAGGCCGC TTCCAGGCGC TGGCAGACGT CAACCTGAGC ATCGCCCGCG GCGAGTTCGT CGCGTTGATC GGCCATTCCG GCTGCGGCAA ATCCACCGTG CTCAACCTGA TCGCCGGCCT GCTCGAGGCC AACGAAGGCG GCTTGATCTG CAACGGCCGC GAGATCGACG GGCCCGGCCC GGAGCGCGCC GTGGTGTTCC AGAACCACAG CCTGCTGCCC TGGATGACCT GCTTCGGCAA CGTCCATCTG GCCGTGGAGA AGGTCTTCGG CGCGCGCGAA AGCAAGGCCC AGCTCAAGGC CCGCACCGAG CAGGCCCTGA ACATGGTCGG CCTCAGCCAT GCCATGCACA AGCATCCCAA CGAGATCTCC GGCGGCATGA AGCAGCGCGT CGGCATCGCC CGCGCCCTGG CCATGGAGCC CAAGGTGCTG CTGATGGACG AGCCGTTCGG CGCCCTCGAT GCCCTGACCC GCGCGCACCT GCAGGACGAG CTGCTGCGTA TCGTCGGGCA GACCCAGAGC ACCGTGGTGA TGGTCACCCA TGACGTCGAC GAAGCCGTGC TGCTGTCCGA TCGCATCGTG ATGATGACCA ACGGCCCGGC CGCCACCGTC GGCGAAATTC TCGCCGTCGA CCTGCCGCGC CCGCGCGACC GCCTGGCACT GGCCAACGAC CCGCAGTACC ACGCCTACCG CACCGCGGTG CTGGAGTTCC TCTACCAGCG TCAGCAGCGA CCGGCCGCCT GA
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Protein sequence | MDKFVELTAV SKHFDTKKGR FQALADVNLS IARGEFVALI GHSGCGKSTV LNLIAGLLEA NEGGLICNGR EIDGPGPERA VVFQNHSLLP WMTCFGNVHL AVEKVFGARE SKAQLKARTE QALNMVGLSH AMHKHPNEIS GGMKQRVGIA RALAMEPKVL LMDEPFGALD ALTRAHLQDE LLRIVGQTQS TVVMVTHDVD EAVLLSDRIV MMTNGPAATV GEILAVDLPR PRDRLALAND PQYHAYRTAV LEFLYQRQQR PAA
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