| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2086 |
|---|
| Symbol | |
|---|
| ID | 5109820 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2313258 |
|---|
| End bp | 2314247 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640503330 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001187579 |
|---|
| Protein GI | 146307114 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2267] Lysophospholipase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.671906 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.0731474 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAGCA GCAGTGAGCT TTTCCCCGTC GCCCTGATCA GCGCCGAGTT GCGCGGTGAT
CTGAGCGAGG ACGTCTACCT CCTCAAACCC AACAACAGCC CCGATTGCAC TGTCGAACTG
GCCCTGACCC GCCTGGGCCT GGCCGGCGCC GAGGGCGAGC GTGGCGTACC GGTGGTACTG
CTGCACGGCA GCTTCTCCAA TCGTCGCTTC TGGTATTCGC CCAAGGGCAT CGGCCTGGGC
GCCTACCTGG CGCGCGCGGG TTTCGATGTG TGGATCGCCG AAATGCGCGG TCATGGCCTG
TCACCACGCA ATGAAAGCTA CCGAAGCAAC AACGTGGCGC AGTACGTGCG TTACGATCTG
CCGGCCGTTG CCGATTTCAT CTTCGAGCAG AGCGGGCAGG CCGCACACTG GATCGGACAC
TCCCTCGGTG GCGTGATCCT GGCGGCGGCG CTGGGTGGTG GCTTCCTCGA TGAGTCGCGC
GCCCGCTCGG CGGCGTTGTT CGGCAGCCAG ATCAGCCGCA TCTACTGGCC GCTGAAGCTG
CCGCCGGTGG AGTGGGGCGC TCGGTTGCTG CTGCGCGCCT TTCCCTATCT ATCCGGGCGA
CGACTGAAGC GGGGACCGGA AGATGAACCC ATTGGCCTGG CTCAGGAAAC CCTGCGCTGG
CTGGGCCTGT TCGGCCGCTT CGGCGATCGC GAGCAGGACT GGTGGACAGG GCTGACCCAG
GTGCGTCTGC CCATTCTGGC GGTCGGCGCC GTGGCGGATC ATCAGGACCC TGCCTGGGCT
TGCCGCAAGT TGCTGGAGCA ATGCAGCGCA GCGCCGACGC AGTTTCTGCT GCTGGGCAAG
AGCAATGGTT TTTCCAGCGA CTTCGGCCAT ATCGAGATGC TGGTCAGCAA GGAAGCGCAG
CGTGAGGTGT GGCCGCTCAC TGAATACTGG CTGCAACACC TGCAACTGCC GGCAGGTTTC
AGCGAGGAAG CGGCGAGTGT GGGCGGTTGA
|
|---|
| Protein sequence | MQSSSELFPV ALISAELRGD LSEDVYLLKP NNSPDCTVEL ALTRLGLAGA EGERGVPVVL
LHGSFSNRRF WYSPKGIGLG AYLARAGFDV WIAEMRGHGL SPRNESYRSN NVAQYVRYDL
PAVADFIFEQ SGQAAHWIGH SLGGVILAAA LGGGFLDESR ARSAALFGSQ ISRIYWPLKL
PPVEWGARLL LRAFPYLSGR RLKRGPEDEP IGLAQETLRW LGLFGRFGDR EQDWWTGLTQ
VRLPILAVGA VADHQDPAWA CRKLLEQCSA APTQFLLLGK SNGFSSDFGH IEMLVSKEAQ
REVWPLTEYW LQHLQLPAGF SEEAASVGG
|
|---|
| |