Gene Pmen_2086 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2086 
Symbol 
ID5109820 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2313258 
End bp2314247 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content65% 
IMG OID640503330 
Producthypothetical protein 
Protein accessionYP_001187579 
Protein GI146307114 
COG category[I] Lipid transport and metabolism 
COG ID[COG2267] Lysophospholipase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.671906 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.0731474 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAAGCA GCAGTGAGCT TTTCCCCGTC GCCCTGATCA GCGCCGAGTT GCGCGGTGAT 
CTGAGCGAGG ACGTCTACCT CCTCAAACCC AACAACAGCC CCGATTGCAC TGTCGAACTG
GCCCTGACCC GCCTGGGCCT GGCCGGCGCC GAGGGCGAGC GTGGCGTACC GGTGGTACTG
CTGCACGGCA GCTTCTCCAA TCGTCGCTTC TGGTATTCGC CCAAGGGCAT CGGCCTGGGC
GCCTACCTGG CGCGCGCGGG TTTCGATGTG TGGATCGCCG AAATGCGCGG TCATGGCCTG
TCACCACGCA ATGAAAGCTA CCGAAGCAAC AACGTGGCGC AGTACGTGCG TTACGATCTG
CCGGCCGTTG CCGATTTCAT CTTCGAGCAG AGCGGGCAGG CCGCACACTG GATCGGACAC
TCCCTCGGTG GCGTGATCCT GGCGGCGGCG CTGGGTGGTG GCTTCCTCGA TGAGTCGCGC
GCCCGCTCGG CGGCGTTGTT CGGCAGCCAG ATCAGCCGCA TCTACTGGCC GCTGAAGCTG
CCGCCGGTGG AGTGGGGCGC TCGGTTGCTG CTGCGCGCCT TTCCCTATCT ATCCGGGCGA
CGACTGAAGC GGGGACCGGA AGATGAACCC ATTGGCCTGG CTCAGGAAAC CCTGCGCTGG
CTGGGCCTGT TCGGCCGCTT CGGCGATCGC GAGCAGGACT GGTGGACAGG GCTGACCCAG
GTGCGTCTGC CCATTCTGGC GGTCGGCGCC GTGGCGGATC ATCAGGACCC TGCCTGGGCT
TGCCGCAAGT TGCTGGAGCA ATGCAGCGCA GCGCCGACGC AGTTTCTGCT GCTGGGCAAG
AGCAATGGTT TTTCCAGCGA CTTCGGCCAT ATCGAGATGC TGGTCAGCAA GGAAGCGCAG
CGTGAGGTGT GGCCGCTCAC TGAATACTGG CTGCAACACC TGCAACTGCC GGCAGGTTTC
AGCGAGGAAG CGGCGAGTGT GGGCGGTTGA
 
Protein sequence
MQSSSELFPV ALISAELRGD LSEDVYLLKP NNSPDCTVEL ALTRLGLAGA EGERGVPVVL 
LHGSFSNRRF WYSPKGIGLG AYLARAGFDV WIAEMRGHGL SPRNESYRSN NVAQYVRYDL
PAVADFIFEQ SGQAAHWIGH SLGGVILAAA LGGGFLDESR ARSAALFGSQ ISRIYWPLKL
PPVEWGARLL LRAFPYLSGR RLKRGPEDEP IGLAQETLRW LGLFGRFGDR EQDWWTGLTQ
VRLPILAVGA VADHQDPAWA CRKLLEQCSA APTQFLLLGK SNGFSSDFGH IEMLVSKEAQ
REVWPLTEYW LQHLQLPAGF SEEAASVGG