| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2084 |
|---|
| Symbol | |
|---|
| ID | 5109818 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 2309699 |
|---|
| End bp | 2310517 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640503328 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001187577 |
|---|
| Protein GI | 146307112 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1806] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.00711246 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.0225535 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGAA CCGCTTTCTT CATCTCCGAC GGCACCGGCA TCACGGCCGA AACCCTGGGC
CAGAGCCTGC TCGCGCAGTT CGAGAATATT CAATTCACCA AACTTACGCG TCCTTATATC
GACAGCATCG ATAAAGCGCG CGCCATGGTA CAACAAATCG ATGCTGCCGC CGAAAGGGAC
GGTGCACGCC CGATCATCTT CGACACCATC GTCAATCGCG ATATTCGTGC GATCCTCGAT
ACCGCAAATG GTTTCATGAT CGATATCTTC TCCACCTTTC TCTCGCCCCT GGAACAGGAG
TTGAGTTCGC ACTCCTCCTA TTCCGTCGGC AAGTCGCACT CCATTGGCCA GCACTCCAAC
TACATGGAGC GCATCGAGGC GGTGAACTTC GCCCTGGACA ATGACGACGG CGCGCGCACC
CATTATTACG ACAAGGCCGA TCTGATCCTG GTAGGCGTCT CGCGCTGCGG CAAAACGCCC
ACCTGCCTGT ACATGGCGAT GCAGTACGGC ATCCGCGCCG CCAACTACCC GCTGACCGAA
GACGACATGG AGCGCCTGCA ACTGCCCGAC TCGCTGAAAA AGCACCGCGA CAAGCTGTTC
GGCCTGACCA TCGACCCGGA TCGCCTCACC GCCATCCGCC ACGAGCGCAA GCCCAACAGC
CGCTACGCCA GCTTCGCCCA GTGCGAGTTC GAAGTGCGCG AGGTGGAGAA CCTGTTCCGC
CGTGAAAACA TCGCCTTCAT CAACTCCACG CATTTCTCGG TGGAGGAAAT CTCCGCCAAG
ATCCTGGTGG AAAAAGGTGT TGAAAGGCGC CTCAAATAA
|
|---|
| Protein sequence | MKRTAFFISD GTGITAETLG QSLLAQFENI QFTKLTRPYI DSIDKARAMV QQIDAAAERD
GARPIIFDTI VNRDIRAILD TANGFMIDIF STFLSPLEQE LSSHSSYSVG KSHSIGQHSN
YMERIEAVNF ALDNDDGART HYYDKADLIL VGVSRCGKTP TCLYMAMQYG IRAANYPLTE
DDMERLQLPD SLKKHRDKLF GLTIDPDRLT AIRHERKPNS RYASFAQCEF EVREVENLFR
RENIAFINST HFSVEEISAK ILVEKGVERR LK
|
|---|
| |