| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2080 |
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| Symbol | prpB |
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| ID | 5109814 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2303463 |
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| End bp | 2304350 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640503324 |
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| Product | 2-methylisocitrate lyase |
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| Protein accession | YP_001187573 |
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| Protein GI | 146307108 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.734153 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.114818 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCAGC TTTCCGCCGG CCAGCGCTTC CGCCAGGCCC TCGCTGAAGA GAAACCGCTG
CAGGTAATCG GCGCGATCAA CGCCAACCAT GCGCTGCTGG CCAAGCGTGC GGGCTTCCGT
GCCATCTACC TGTCCGGTGG TGGCGTGGCG GCCGGCTCCC TGGGCCTGCC GGACCTGGGC
ATCAACACCC TCGATGACGT GCTCACCGAC GTACGCCGCA TCACTGATGT GTGCGACCTG
CCGCTGCTGG TGGACATCGA CACCGGCTTT GGCCCCAGCG CCTTCAACAT CGAGCGCACC
ATCAAGAATC TGATCAAGGC CGGCGCCGCC GCCGCGCATA TCGAGGATCA GGTCGGCGCC
AAGCGCTGCG GCCACCGCCC GGGCAAGGAG ATCGTCTCCT GCGAGGAAAT GGTCGACCGC
GTGCGTGCCG CCGCCGACGC CAAGACCGAC CCGGATTTCT TCCTCATCGC CCGTACCGAT
GCCATCCAGG CCGAGGGCGT GGACGCCGCC ATCGAGCGCT GCCAGGCCTA TGTCGAGGCC
GGTGCCGACG GCATCTTCGC CGAGGCCGCC TACGACCTGC CGACCTACCA GCGTTTCGTC
GAGGCGCTGA AGGTGCCTGT GCTGGCCAAC ATCACCGAAT TCGGCGCCAC GCCGCTGTTC
ACCCGCGACG AGCTGGCTTC GGTCGGCGTA GCCATTCAGC TCTACCCGCT GTCGGCCTTC
CGCGCGGCGA ACAAGGCGGC AGAAAGTGTC TACACCTCGA TCCGTCAGAA CGGCCACCAG
AAGGACGTGA TCGAGCTGAT GCAGACCCGC GCCGAGCTGT ACGACCGCAT CGGCTACCAC
GCCTTCGAGC AGAAGCTCGA CGCGCTGTTC GCTGCCGGCA AGAAATAA
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| Protein sequence | MTQLSAGQRF RQALAEEKPL QVIGAINANH ALLAKRAGFR AIYLSGGGVA AGSLGLPDLG
INTLDDVLTD VRRITDVCDL PLLVDIDTGF GPSAFNIERT IKNLIKAGAA AAHIEDQVGA
KRCGHRPGKE IVSCEEMVDR VRAAADAKTD PDFFLIARTD AIQAEGVDAA IERCQAYVEA
GADGIFAEAA YDLPTYQRFV EALKVPVLAN ITEFGATPLF TRDELASVGV AIQLYPLSAF
RAANKAAESV YTSIRQNGHQ KDVIELMQTR AELYDRIGYH AFEQKLDALF AAGKK
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