| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2063 |
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| Symbol | |
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| ID | 5109797 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2284843 |
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| End bp | 2286339 |
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| Gene Length | 1497 bp |
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| Protein Length | 498 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640503307 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_001187556 |
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| Protein GI | 146307091 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1388] FOG: LysM repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.829079 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.0945255 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCTGG CCGGCTGTCA GAGCCTGCCC AGCGATACCC CGGACCGCTC GGCTGACACC
TCCCGAGCCG TGGGCCTGGA GCGCGAGCCG GAGTGGCTCA ACAACCAGGT CAAACCGCGC
GAGTACACCG ATATCTGGGA ACGCATGCGC GACGGCTTCA AGCTTCAGGA CGAGATCGGC
ATCAACCCCC GCATCGAACG CCTGCGCCTC TGGTACGCCA GCAACCCGCG GCATGTCGAC
ACCGTCAGCG AGCGCAGCGC TCCCTACATC CATTACATCG TCGAGCGCCT GGCCGAACGC
GACATGCCGA TGGAGCTGGC CCTGCTGCCG GTGATCGAGA GCGCCTACGA CCCGCAGGCC
TACTCTTCCG CCCATGCCGT CGGTCTCTGG CAATTCATTC CCTCCACCGG TCGTCACTAC
AACCTGCGCC AGACCAACTG GTACGACGGC CGGCGCGACG TCACCGCCTC GACCCAGGCC
GCCCTCAACT ACCTGAGCCG CCTGCACGAG ATGTTCAACG GCGACTGGCT GCTCGCCCTG
GCCGCCTACA ATGCCGGCGA AGGCCGCATT AGCCGCGCCA TCGAACGCAA CGAAAAGCTC
GGCCTGCCCA GCGACTACTG GAACCTGTCG CTGCCCAAGG AAACCGAGGA CTACGTGCCC
AAACTCCTGG CCCTGTCGCA GGTCATCCTG ACGCCCGAGG CCTATGGCGT GACGCTGTCA
CCGATTGCCA ACGAGCCCTA CTTCGAGCAG GTCGCGATCA AGCAGCACAT GGACCTCTCC
CGAGTCGCCA AACTGGCCGA CCTGGATGAG CAGGAACTGC TGCAGCTGAA CCCCGCCTAC
AAACGCGGCA TCACGCTCGA TGGCCCGCAG CACCTCCTGG TACCGACCGA AAAGGCCGAA
CTGCTCAGCG CCAACCTGGC ATTGATGAAG CCTCAGGAGC TGGTCGACTG GCAGAGCTAC
ACCGTACGTT CCGGCGACAG CCTGCACGGC ATCGCCAATC GTCATCACCT GAGCGTGAGC
ATGCTCAAGG ACGTCAATCG TCTGAGCGGC AACAATCTGC GCATCGGCCA GGTACTGACC
ATTCCCGGCA AGCCCGGCGT GCAGCCGAGC GAGCCGCTGT ATCAGCAGCG CAGCGTGGCT
CAGGCTCCGG CGGCGCACAC CTATCAGGTG AAGAACGGCG ACAACCTGTG GCAGATCGCC
CGCGCCAACC AGGTCGCCGT GCACGACCTG CAGCGCTGGA ACAAACTGCA AGGCAACCAG
CTGAAAGTTG GCCAGGTGCT CAACCTGACG GAACCGGGCG CAGGCGCCAC ACAGGTCGCC
AGCGCCAAGC CAGCCAGCAG TGCGCGCGAC AAGGCCACCT ACTACCGGGT TCAGCAAGGC
GATTCGCTGT ACGTCATCGC CAAGCGTTTC AAGATCGACC TCAAGCGATT GCAGGCCTGG
AACCCGCGCA GCAGCACGTT GCGCCCCGGG CAGACAGTGA CGCTCTTCCT GCCCTGA
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| Protein sequence | MILAGCQSLP SDTPDRSADT SRAVGLEREP EWLNNQVKPR EYTDIWERMR DGFKLQDEIG
INPRIERLRL WYASNPRHVD TVSERSAPYI HYIVERLAER DMPMELALLP VIESAYDPQA
YSSAHAVGLW QFIPSTGRHY NLRQTNWYDG RRDVTASTQA ALNYLSRLHE MFNGDWLLAL
AAYNAGEGRI SRAIERNEKL GLPSDYWNLS LPKETEDYVP KLLALSQVIL TPEAYGVTLS
PIANEPYFEQ VAIKQHMDLS RVAKLADLDE QELLQLNPAY KRGITLDGPQ HLLVPTEKAE
LLSANLALMK PQELVDWQSY TVRSGDSLHG IANRHHLSVS MLKDVNRLSG NNLRIGQVLT
IPGKPGVQPS EPLYQQRSVA QAPAAHTYQV KNGDNLWQIA RANQVAVHDL QRWNKLQGNQ
LKVGQVLNLT EPGAGATQVA SAKPASSARD KATYYRVQQG DSLYVIAKRF KIDLKRLQAW
NPRSSTLRPG QTVTLFLP
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