| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2061 |
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| Symbol | |
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| ID | 5109795 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2281423 |
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| End bp | 2283273 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640503305 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001187554 |
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| Protein GI | 146307089 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.409615 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.170665 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCGGA TCTCACGCCC GATGCGTCCC CTCCTCCTGC TGTTCCTGAG CCTGGCCTTG
AGCTTTCCCG CCTCTGCGAC TATCAGCGAA AGCCACGGCT ACGCCCAGTT CGGGACACTC
AAGTACCCCG CCAGCTTCAC CCATTTCGAC TGGGTCAACC CCGAGGCGCC CAAGGGCGGC
ACCCTGCGCA TCATGGCCTC GGGCACCTTC GATACACTGA ACCCCTACCC ACTCAAGGGC
AGCAGCCCGA TTTCCACCGC GCATTTCCTG CAGTACGGCG TGACCGAGCT GAACGAACCG
CTGATGGTCG GCACCGGCCC CTACGATCCG TCCGGGGACG AGCCAGCCTC CAGCTACGGC
CTGATCGCCA GAAGCGTGGA GTACAGCGAG GACCGCAGCT GGGTGGTGTT CAACCTGCGC
CCGGAAGCAC GCTTTCACGA CGGCAAGCCG ATTACCGCCT ATGACGTGGC CTTCTCCTAC
CGCCTGCTGC GCAGCGATGG CCATCCGCAA TACCGTACCA ACCTGCAGGA AGTGAAACGG
GTCGACATTC TCGGCCGCCA TCGCATCCGC TTCGTGTTCA AGCGCGCCGG CAATCCGCTG
CTGATCCTGC GTCTCGGCGA ATTGCCGGTA CTGCCGCAGC ATTATTGGAA GGACCGCGAC
TTCAAGGCGA CCACCTTCGA ACCTCCTCTG GGCAGCGGCC CCTACCGCAT CATCCAGGTG
GTACCCGGCC GACGCCTGGT GTTTCAGCGC GTGAAGAACT GGTGGGGCGA GGATCTGCCG
GTCAACCGCG GCAAGTACAA CTTCGACCGT GTGGAAGTGG AGTTCTACCG CGACAACCAT
GTGGCCTTCG AAGCCTTCAA GGCCGGTGAG TTCGACTTTT ATATCGAGAA CCAGGCGAAG
AACTGGGCCA ACGGCTATCG CTTCCCGGCC GTCATCCGCG GCGACGTGAT CCGCGCCGAG
ATTCCGCACC AGATACCGAC CCAGACCCAG GCGCTGTTCA TGAACACCCG GCGCGCCACG
TTCGCTGACC GCCGGGTACG GCAGGCGCTG GGGCTGATGT TCGACTTCGA ATGGACCAAT
CGCACCCTGT TCAACAACGC CTACGTGCGC GCGGCCAGCT ACTACCCCAA CAGCGAGTTC
TCGGCCACCG GCAAGCCCGA GGGCGCCGAA TGGCTGCTGC TGTCGCCACA CCGCGACAAG
CTGCCCGCCC AGCTGTTCAC CGAACCGCCG ACACAACCGG TAACCGATGG CCGCGGCATC
CCTCGGGAAA CCTTGCGTCG CGCGCTCGGT CTATTGGCCG ACGCCGGCTG GAAGCCCTCC
GGCCAGGAGT TGCGCAACGC CCGTGGCCAA CGCCTCGAGT TCGAGATCAT GCTGGTCAAC
CCCAGCCTCG AGCGCATTCT TCAACCCTAT GTCGCCAACC TTGCCAGCGT CGGCGTTCGC
GCCAATCTGC GCACTGTCGA CCGTGCCCAG TACAAGCAAC GCCTCGATCA GTTCGACTAC
GACATGATTC TGCTCACCCT GCCACAAACC CTGAGCCCCG GCCTGGAACA GTCGCTGTAC
TTCCATTCCA GCCAGGTGGG CATCAAGGGT GGCCGCAACT ATGCGGGGGT CGGTGACCCG
GTGGTCGACG AGATGATCGA CAAACTGCTG TCGGCGCAGA CCCGGGACGA ACAGATCGCG
GCCACCCGCG CGCTGGACCG GGTCTTGCTT TGGCAGCACT ACAGCATTCC CAACTGGTAC
ATCAACTATC ACCGCCTGGC GTACCGCAAC CGGTTCGCCT TCGTCACCAC GCCGCCCTAT
ACCCTGGGCT TGCGCACCTG GTGGCTGAAG CCTACGGAGA ACGCTCGATG A
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| Protein sequence | MDRISRPMRP LLLLFLSLAL SFPASATISE SHGYAQFGTL KYPASFTHFD WVNPEAPKGG
TLRIMASGTF DTLNPYPLKG SSPISTAHFL QYGVTELNEP LMVGTGPYDP SGDEPASSYG
LIARSVEYSE DRSWVVFNLR PEARFHDGKP ITAYDVAFSY RLLRSDGHPQ YRTNLQEVKR
VDILGRHRIR FVFKRAGNPL LILRLGELPV LPQHYWKDRD FKATTFEPPL GSGPYRIIQV
VPGRRLVFQR VKNWWGEDLP VNRGKYNFDR VEVEFYRDNH VAFEAFKAGE FDFYIENQAK
NWANGYRFPA VIRGDVIRAE IPHQIPTQTQ ALFMNTRRAT FADRRVRQAL GLMFDFEWTN
RTLFNNAYVR AASYYPNSEF SATGKPEGAE WLLLSPHRDK LPAQLFTEPP TQPVTDGRGI
PRETLRRALG LLADAGWKPS GQELRNARGQ RLEFEIMLVN PSLERILQPY VANLASVGVR
ANLRTVDRAQ YKQRLDQFDY DMILLTLPQT LSPGLEQSLY FHSSQVGIKG GRNYAGVGDP
VVDEMIDKLL SAQTRDEQIA ATRALDRVLL WQHYSIPNWY INYHRLAYRN RFAFVTTPPY
TLGLRTWWLK PTENAR
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