Gene Pmen_2057 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2057 
Symbol 
ID5109791 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2275867 
End bp2277480 
Gene Length1614 bp 
Protein Length537 aa 
Translation table11 
GC content64% 
IMG OID640503301 
ProductABC transporter related 
Protein accessionYP_001187550 
Protein GI146307085 
COG category[R] General function prediction only 
COG ID[COG4172] ABC-type uncharacterized transport system, duplicated ATPase component 
TIGRFAM ID[TIGR02323] phosphonate C-P lyase system protein PhnK 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0471715 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value0.693771 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCAGA ACGAAACCCT GCTGCAAGTA CGCGACCTGG CCGTCGAGTT CGTCATGGGC 
GAACAGTGCC AGCGCGTGGT CGAAGGCGTC AGCTTCGACA TCCATAAAGG CGAGACCCTG
GCCCTGGTTG GCGAGAGCGG CTCGGGCAAG TCGGTTACGG CGCACTCCAT CCTGCGCCTA
TTGCCCTACC CGCTGGCGCG GCATCCGGCC GGCAGCATCG AGTACGCCGG GCAGGATCTG
CTCAAGCTCG GCGAGGGCCG CCTGCGCGGC ATCCGTGGCA ACCGCATCGC CATGGTCTTT
CAGGAGCCGA TGACCTCGCT CAACCCGCTG CACTGCATCG AGAAGCAGAT CAACGAGGTG
CTCGCCCTGC ACAAAGGGTT GCGCGGCAAG GCCGCCAGCG CACGTACCCT GGAGCTGCTG
GAACTGGTGG GCATTCCCGA ACCGAAGAAG CGCCTGAAGG CCTACCCGCA CGAACTTTCC
GGCGGCCAGC GGCAGCGGGT GATGATCGCC ATGGCCCTGG CCAACGAGCC CGAGCTGCTG
ATCGCCGACG AGCCCACCAC CGCGCTGGAC GTCACCGTGC AGCTGAAAAT CCTCGAACTG
CTCAAGGATC TGCAGGCGCG CCTGGGCATG TCCTTGCTGC TGATCAGCCA CGATCTCAAC
CTGGTACGCA GAATTGCCCA TCGCGTATGT GTCATGCAGC GCGGTCGCAT CGTCGAACAG
GCGTCGTGTG AACAATTGTT CCAGGCTCCA GAGCATCCCT ATACCCGGGA ACTGCTCGGC
GCCGAGCCCA GCGGCGATCC CGCGGCCAAC CCCGTGGGCC AGCCGATACT GGAAGTGGAC
GACCTGCGCG TGTGGTTCCC GATCAAGAAG GGGCTGCTGC GCCGGACGGT GGATCATGTC
AAGGCAGTGG ACGGCATCAA CTTCAGCCTG CCCCAGGGCC AAACCCTGGG CATCGTGGGT
GAAAGCGGTT CCGGTAAGTC CACCCTGGGC ATGGCCATTC TGCGGTTGCT CGCCAGCCGC
GGTGACATCC GCTTTCAGGG CCAGCAGCTG CAGGGCATGA GCCAGCATGA GGTACGCCCC
CTGCGGCGAC AGATGCAGGT GGTGTTCCAG GACCCCTTCG GTAGCCTGAG CCCACGCATG
TCGGTGGCCC AGATCGTCGG AGAAGGCCTG CGCATTCACC GCATGGGCAG CGAGGCAGAG
CAGGAACAGG CGATCATCGA CGCGCTTTTG GAGGTAGGGC TGGACCCGCA GACGCGGCAT
CGCTACCCCC ACGAGTTTTC CGGCGGGCAA CGGCAGCGGA TTGCCATTGC CCGGGCACTG
GTGTTGAAAC CGGCGCTGAT TCTGCTGGAC GAGCCCACCT CGGCGCTCGA CCGCACGGTT
CAGCGCCAGG TGGTGGAGTT GTTGCGCGGC TTGCAGGCCA AGTACAACCT GACCTATCTG
TTTATCAGCC ATGACCTGGC GGTAGTCAGA GCGCTGAGCC ACCAGTTGAT GGTGGTCAAG
CAGGGCCAGG TAGTGGAACA GGGGTCTGCC GAGTCGATCT TCAGCGCACC GCAACACCCT
TATACGCAGC AGTTGCTGGA AGCCGCTTTC ATGGCCCCGG CAACGGCTCA CTGA
 
Protein sequence
MSQNETLLQV RDLAVEFVMG EQCQRVVEGV SFDIHKGETL ALVGESGSGK SVTAHSILRL 
LPYPLARHPA GSIEYAGQDL LKLGEGRLRG IRGNRIAMVF QEPMTSLNPL HCIEKQINEV
LALHKGLRGK AASARTLELL ELVGIPEPKK RLKAYPHELS GGQRQRVMIA MALANEPELL
IADEPTTALD VTVQLKILEL LKDLQARLGM SLLLISHDLN LVRRIAHRVC VMQRGRIVEQ
ASCEQLFQAP EHPYTRELLG AEPSGDPAAN PVGQPILEVD DLRVWFPIKK GLLRRTVDHV
KAVDGINFSL PQGQTLGIVG ESGSGKSTLG MAILRLLASR GDIRFQGQQL QGMSQHEVRP
LRRQMQVVFQ DPFGSLSPRM SVAQIVGEGL RIHRMGSEAE QEQAIIDALL EVGLDPQTRH
RYPHEFSGGQ RQRIAIARAL VLKPALILLD EPTSALDRTV QRQVVELLRG LQAKYNLTYL
FISHDLAVVR ALSHQLMVVK QGQVVEQGSA ESIFSAPQHP YTQQLLEAAF MAPATAH