Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2057 |
Symbol | |
ID | 5109791 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2275867 |
End bp | 2277480 |
Gene Length | 1614 bp |
Protein Length | 537 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640503301 |
Product | ABC transporter related |
Protein accession | YP_001187550 |
Protein GI | 146307085 |
COG category | [R] General function prediction only |
COG ID | [COG4172] ABC-type uncharacterized transport system, duplicated ATPase component |
TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0471715 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 0.693771 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCCAGA ACGAAACCCT GCTGCAAGTA CGCGACCTGG CCGTCGAGTT CGTCATGGGC GAACAGTGCC AGCGCGTGGT CGAAGGCGTC AGCTTCGACA TCCATAAAGG CGAGACCCTG GCCCTGGTTG GCGAGAGCGG CTCGGGCAAG TCGGTTACGG CGCACTCCAT CCTGCGCCTA TTGCCCTACC CGCTGGCGCG GCATCCGGCC GGCAGCATCG AGTACGCCGG GCAGGATCTG CTCAAGCTCG GCGAGGGCCG CCTGCGCGGC ATCCGTGGCA ACCGCATCGC CATGGTCTTT CAGGAGCCGA TGACCTCGCT CAACCCGCTG CACTGCATCG AGAAGCAGAT CAACGAGGTG CTCGCCCTGC ACAAAGGGTT GCGCGGCAAG GCCGCCAGCG CACGTACCCT GGAGCTGCTG GAACTGGTGG GCATTCCCGA ACCGAAGAAG CGCCTGAAGG CCTACCCGCA CGAACTTTCC GGCGGCCAGC GGCAGCGGGT GATGATCGCC ATGGCCCTGG CCAACGAGCC CGAGCTGCTG ATCGCCGACG AGCCCACCAC CGCGCTGGAC GTCACCGTGC AGCTGAAAAT CCTCGAACTG CTCAAGGATC TGCAGGCGCG CCTGGGCATG TCCTTGCTGC TGATCAGCCA CGATCTCAAC CTGGTACGCA GAATTGCCCA TCGCGTATGT GTCATGCAGC GCGGTCGCAT CGTCGAACAG GCGTCGTGTG AACAATTGTT CCAGGCTCCA GAGCATCCCT ATACCCGGGA ACTGCTCGGC GCCGAGCCCA GCGGCGATCC CGCGGCCAAC CCCGTGGGCC AGCCGATACT GGAAGTGGAC GACCTGCGCG TGTGGTTCCC GATCAAGAAG GGGCTGCTGC GCCGGACGGT GGATCATGTC AAGGCAGTGG ACGGCATCAA CTTCAGCCTG CCCCAGGGCC AAACCCTGGG CATCGTGGGT GAAAGCGGTT CCGGTAAGTC CACCCTGGGC ATGGCCATTC TGCGGTTGCT CGCCAGCCGC GGTGACATCC GCTTTCAGGG CCAGCAGCTG CAGGGCATGA GCCAGCATGA GGTACGCCCC CTGCGGCGAC AGATGCAGGT GGTGTTCCAG GACCCCTTCG GTAGCCTGAG CCCACGCATG TCGGTGGCCC AGATCGTCGG AGAAGGCCTG CGCATTCACC GCATGGGCAG CGAGGCAGAG CAGGAACAGG CGATCATCGA CGCGCTTTTG GAGGTAGGGC TGGACCCGCA GACGCGGCAT CGCTACCCCC ACGAGTTTTC CGGCGGGCAA CGGCAGCGGA TTGCCATTGC CCGGGCACTG GTGTTGAAAC CGGCGCTGAT TCTGCTGGAC GAGCCCACCT CGGCGCTCGA CCGCACGGTT CAGCGCCAGG TGGTGGAGTT GTTGCGCGGC TTGCAGGCCA AGTACAACCT GACCTATCTG TTTATCAGCC ATGACCTGGC GGTAGTCAGA GCGCTGAGCC ACCAGTTGAT GGTGGTCAAG CAGGGCCAGG TAGTGGAACA GGGGTCTGCC GAGTCGATCT TCAGCGCACC GCAACACCCT TATACGCAGC AGTTGCTGGA AGCCGCTTTC ATGGCCCCGG CAACGGCTCA CTGA
|
Protein sequence | MSQNETLLQV RDLAVEFVMG EQCQRVVEGV SFDIHKGETL ALVGESGSGK SVTAHSILRL LPYPLARHPA GSIEYAGQDL LKLGEGRLRG IRGNRIAMVF QEPMTSLNPL HCIEKQINEV LALHKGLRGK AASARTLELL ELVGIPEPKK RLKAYPHELS GGQRQRVMIA MALANEPELL IADEPTTALD VTVQLKILEL LKDLQARLGM SLLLISHDLN LVRRIAHRVC VMQRGRIVEQ ASCEQLFQAP EHPYTRELLG AEPSGDPAAN PVGQPILEVD DLRVWFPIKK GLLRRTVDHV KAVDGINFSL PQGQTLGIVG ESGSGKSTLG MAILRLLASR GDIRFQGQQL QGMSQHEVRP LRRQMQVVFQ DPFGSLSPRM SVAQIVGEGL RIHRMGSEAE QEQAIIDALL EVGLDPQTRH RYPHEFSGGQ RQRIAIARAL VLKPALILLD EPTSALDRTV QRQVVELLRG LQAKYNLTYL FISHDLAVVR ALSHQLMVVK QGQVVEQGSA ESIFSAPQHP YTQQLLEAAF MAPATAH
|
| |