| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2054 |
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| Symbol | |
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| ID | 5109788 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2271376 |
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| End bp | 2273223 |
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| Gene Length | 1848 bp |
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| Protein Length | 615 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640503298 |
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| Product | PpiC-type peptidyl-prolyl cis-trans isomerase |
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| Protein accession | YP_001187547 |
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| Protein GI | 146307082 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000102165 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.112605 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCAAA ACATCAGGGA CAATTCACGC GGTTGGATTG CCAAAATCAT CATCGGCCTC
ATCGTGATGC TGATGGCCTT CACTGGTTTC GAAGCCATCG TCACGGGCAC CAGCAATCGC
AACAACGCGG CAGAGGTGAA CGGCGACACC ATTACCCTCA ACGAGCTGAA TACGGCTGTT
GAGATGCAGC GCCGTCAGTT GCTGCAGCAG CTGGGACGTG ATTTCGACGC GTCGCTGCTC
GACGACAAAC TGCTGCGCGA GGCTTCGCTC AAGGGCTTGA TCGAGCGCAA GCTGCTGCTC
CAGGCCGCCG GCGACGCAGA TTTCGCCTTT TCGCAAGCGG CGCTGGATCA GGTCATTCTG
CAAACTCCCG AATTTCAGGT GGATGGCCGT TTCGATGCTG CCCGCTTCGA TCAGGTGATC
CGCCAGATGG GCTACAGCCG TCTGCAGTTC CGCCAGATGC TGGAAGAGGA AATGCTGATC
GGTCAGCTGC GTGCCGGCCT CGGTGCCAGC AGCTTCGTCA CCGAGCAGGA CGCACGCGCG
TTCGCCAATC TGGAGCGCCA GACCCGCGAC TTCGCCAGCG TCACCATCAA GGCCGATCCG
GCTGCCGTGG AACTGGCGGA CAGCGACGTG CAGGCCTACT ACGACGAGCA TGCCAGCGAA
TTCATGAGCC CCGAGCAGGT GGTGCTGGAG TACGTCGAGC TGCACAAGGA CAGCTTCTTC
GATCAGATCG AAGTCAGCGA CGACGATCTG CAGCCGCTCT ACGAGAGCGA GATCGCCAAT
CTGGCAGAGC AGCGTCAGGC GGCGCACATC CTGATCGAGG GTGACGACGC CGCGGCGCGC
ACCAAGATCG AGGAAATCAA GGCGCGCGTC GATGCAGGCG AGGATTTCGC GGCACTGGCC
AAGGAGTTTT CCGAAGATCC GGGCTCGGCT GCCGATGGCG GTGATCTGGG TTATGCCGGC
CCTGGCGTCT ACGATCCGGC GTTCGAGGAG GCGCTCTATG CGCTGCAAAC GGGCCAGGTT
TCCGAGCCCG TACGCAGCGA CTTTGGCTGG CACCTGATCA AGCTGCTCGG CGTGCAGGCA
CCCGAGGTGC CGAGCTTCGA CAGCCTCAAG GACAAGCTGG CTCGCGATTT CAAGGCGCAG
CAGGTCGAGC AGCGTTTCGT CGAAGCAACC AAGCAACTGG AAGACGCCGC GTTCGAAGCT
TCCGATCTGG CTCAGCCGGC CCAGGAGCTG GGGCTCGAAC TGAAGGTCAG CGAGGCGTTC
GGTCGCGAGG GCGGTGCCAC GGGCATCACT GCCAATCGTC AGGTGCTGCA GGCCGCCTTC
AGTCCTGAAG TGCTGGAGGA CGGTACCAAC AGCTCCACCA TCGAACTGGA CCCGAGCACC
GTCGTGGTGG TGCGCGCCAA GGAGCACCGT AAGCCCGAGC AGCTGCCGCT CGAGCAGGTG
GCTGAGAGCA TTCGCGCTCA CCTGTTGCAG GAACGTGCCA GCGCCGCCGC CAAGGCAGAG
GGCGAGAAGC TGCTGGCTGC GGCCCGAGCT GGCGAGTCGG AGGGCGCGAA CTGGCAGGTG
CAGGAAGCGG CCACCCGTAG TCAGGATGGC GTGGAGCCCA AGGTTTTGCA GGCGCTGTTC
CGCATGTCCA AGCCGACCAC TGCAGGCGAG CCGAGCTACG CCGGCGTGAC GCTGAACAAT
GGCGATTACG TCGTGCTGCG CCTCGATGGC GTGAACGCGC CCGATGAAGC GCTGACCAGC
GAAGAGCTGG CGATGTATCG CAACTTCCTG GCATCGCGCG CCGGTCAGCA GGACTTCGCT
GCGCTGCGCA AGCAGCTGGA AGCCAAGGCC GACATCGAGC GTTTCTGA
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| Protein sequence | MLQNIRDNSR GWIAKIIIGL IVMLMAFTGF EAIVTGTSNR NNAAEVNGDT ITLNELNTAV
EMQRRQLLQQ LGRDFDASLL DDKLLREASL KGLIERKLLL QAAGDADFAF SQAALDQVIL
QTPEFQVDGR FDAARFDQVI RQMGYSRLQF RQMLEEEMLI GQLRAGLGAS SFVTEQDARA
FANLERQTRD FASVTIKADP AAVELADSDV QAYYDEHASE FMSPEQVVLE YVELHKDSFF
DQIEVSDDDL QPLYESEIAN LAEQRQAAHI LIEGDDAAAR TKIEEIKARV DAGEDFAALA
KEFSEDPGSA ADGGDLGYAG PGVYDPAFEE ALYALQTGQV SEPVRSDFGW HLIKLLGVQA
PEVPSFDSLK DKLARDFKAQ QVEQRFVEAT KQLEDAAFEA SDLAQPAQEL GLELKVSEAF
GREGGATGIT ANRQVLQAAF SPEVLEDGTN SSTIELDPST VVVVRAKEHR KPEQLPLEQV
AESIRAHLLQ ERASAAAKAE GEKLLAAARA GESEGANWQV QEAATRSQDG VEPKVLQALF
RMSKPTTAGE PSYAGVTLNN GDYVVLRLDG VNAPDEALTS EELAMYRNFL ASRAGQQDFA
ALRKQLEAKA DIERF
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