| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2047 |
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| Symbol | |
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| ID | 5109781 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2261408 |
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| End bp | 2263150 |
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| Gene Length | 1743 bp |
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| Protein Length | 580 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640503288 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001187540 |
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| Protein GI | 146307075 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.120072 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.523187 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCGACA ATAACAACAA GACCCGACAT AGCATGGCGT TGGCCGCCTT GCTGGCGTTG
TCCGGTTTGA GCGGTGCGGC CTGGGCGGAT GCCTATGAAG AGGCCGCGAA GAAATGGATC
GCCGAGGAGT TCAACCCCTC GACCCTGACG CCCGAGCAGC AGCTCGAAGA GCTGAAATGG
TTCATCAAGG CCGCCGAGCC GTTTCGCGGC ATGAACATCA GCGTGGTGTC GGAAACCATC
ACCACCCACG AGTACGAGTC CAAGGTGCTG GCCAAGGCGT TCAGCGAGAT CACCGGGATC
AAGCTCAAGC ACGACTTGCT GCAGGAAGGC GACGTGGTGG AGAAGCTGCA GACGCAGATG
CAGTCGGACA AGAACATCTA CGACGGCTGG GTCAACGACT CCGACCTGAT CGGCACCCAC
GCGCGTTACG GCAAGGCGGT GGCGATCAGC GACATGATCG AGGGCGAGGG CAAGGACTTC
ACCTCGCCGA CCCTGGATCT CGAGGACTTT ATCGGTCTGT CCTTCACCAC CGGGCCGGAC
GGCAAGCTCT ATCAGCTGCC CGACCAGCAG TTCGCCAACC TCTACTGGTT CCGCGCCGAC
TGGTTCGAGC GCCCGGAGCT GAAAGCCAAG TTCAAGGAAA TCTACGGCTA CGAGCTGGGG
GTGCCGGTCA ACTGGTCGGC CTATGAGGAC ATCGCCGAGT TCTTCTCGGT GCACGTCAAG
GAAATCGACG GTCAGCGCGT CTACGGCCAC ATGGACTACG GCAAGAAGGA CCCGTCGCTG
GGCTGGCGCT TCACCGATGC CTGGTTCTCC ATGGCCGGTG GCGGCGACAA GGGCCTGCCA
AACGGGTTGC CGGTAGACGA GTGGGGCATT CGCGTCGACG GCTGCCGGCC GGTGGGCTCC
AGCGTTGCCC GCGGCGGCGA CACCAACGGT CCGGCGGCGG TGTTCGCGAC GCAGAAATAC
GTCGACTGGA TGCGCCAGTA CGCACCGCGT GAGGCCCAGG GCATGACCTT CTCCGAGGCG
GGCCCGGTGC CGGCGCAGGG TGCCATCGCC CAGCAGATCT TCTGGTACAC CGCCTTTACC
GCCGACATGA CCAAGCCGGG CCTGCCGGTG GTCAACGAGG ACGGCACGCC GAAATGGCGT
ATGGCGCCGT CGCCGAAAGG GCCGTACTGG GAGGAGGGCA TGAAGCTTGG TTATCAGGAT
GCCGGTTCCT GGACCTTCCT CAAGTCCACC CCGGAGAAGC AGCGCCTGGC CGCCTGGCTC
TATGCGCAGT TCGTCACTTC CAAGACCGTG TCGCTGAAGA AGACCCTGGT CGGCCTGACG
CCGATCCGCG AGTCGGACAT CAACTCACAG GCCATGACCG ACGCCGCGCC CAAGCTCGGC
GGACTGGTGG AGTTCTACCG CAGCCCGGCC CGCGTGCAGT GGACGCCGAC CGGTACCAAC
GTGCCGGATT ATCCGCGTCT GGCCCAGCTG TGGTGGCAGT TCATCGCCGA GGCCGCCAGT
GGCGACAAGA CCCCGCAACA GGCGCTCGAT GGCCTGGCCG CAGCGCAGGA CACCATGCTC
GGCCGTCTGG AGCGCTCCGG CGTGCTGGGT GAATGCGGGC CGAAGCTGAA CGAGCCGCGG
GATCCGCAGT ACTGGTTCGA TCAGCCCGGT GCGCCCAAGC CCAAGCTGGA GAACGAGAAG
CCGCAGGGCG AAACCATCGC CTACGACGAG CTGCTCAAGT CCTGGGAGCA GGCGCGCAAC
TGA
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| Protein sequence | MFDNNNKTRH SMALAALLAL SGLSGAAWAD AYEEAAKKWI AEEFNPSTLT PEQQLEELKW
FIKAAEPFRG MNISVVSETI TTHEYESKVL AKAFSEITGI KLKHDLLQEG DVVEKLQTQM
QSDKNIYDGW VNDSDLIGTH ARYGKAVAIS DMIEGEGKDF TSPTLDLEDF IGLSFTTGPD
GKLYQLPDQQ FANLYWFRAD WFERPELKAK FKEIYGYELG VPVNWSAYED IAEFFSVHVK
EIDGQRVYGH MDYGKKDPSL GWRFTDAWFS MAGGGDKGLP NGLPVDEWGI RVDGCRPVGS
SVARGGDTNG PAAVFATQKY VDWMRQYAPR EAQGMTFSEA GPVPAQGAIA QQIFWYTAFT
ADMTKPGLPV VNEDGTPKWR MAPSPKGPYW EEGMKLGYQD AGSWTFLKST PEKQRLAAWL
YAQFVTSKTV SLKKTLVGLT PIRESDINSQ AMTDAAPKLG GLVEFYRSPA RVQWTPTGTN
VPDYPRLAQL WWQFIAEAAS GDKTPQQALD GLAAAQDTML GRLERSGVLG ECGPKLNEPR
DPQYWFDQPG APKPKLENEK PQGETIAYDE LLKSWEQARN
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