Gene Pmen_2045 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2045 
Symbol 
ID5109779 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2260271 
End bp2261071 
Gene Length801 bp 
Protein Length266 aa 
Translation table11 
GC content61% 
IMG OID640503286 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001187538 
Protein GI146307073 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0395] ABC-type sugar transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0321729 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value0.632864 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGCTGC GCAAACGTCT GGCACTGCTG ATCTACTTCC TGTTTCTGCT GGTGCCGATC 
TACTGGCTGC TGAACATGTC GTTCAAGAGC AACACCGAGA TTCTCGGGGG GCTCAGCCTG
TGGCCGCAGA ACTTCACCCT GGACAACTAC CGGGTGATCT TCACCGACCG CAGCTGGTAC
GAGGGCTACC TCAATTCGCT GTATTACGTC AGCCTCAACA CCCTGATCTC GCTCAGCGTG
GCGCTGCCGG CGGCCTATGC CTTCTCGCGC TACCGTTTTC TCGGCGACAA GCACCTGTTC
TTCTGGCTGC TGACCAACCG CATGGCGCCG CCGGCGGTGT TCCTGCTGCC GTTCTTCCAG
CTCTATTCGT CCATCGGCCT GTTCGACACC CATATCGCCG TGGCGCTGGC GCACTGCCTG
TTCAACGTGC CGCTGGCGGT GTGGATTCTC GAGGGCTTCA TGTCCAGCGT GCCGAAGGAA
ATCGACGAGA CGGCCTATAT CGACGGTTAC AGCTTCCCGA AATTCTTCGT GAAGATCTTC
ATCCCGCTGA TCCGCTCCGG CATCGGCGTC ACGGCCTTCT TCTGCTTCAT GTTTTCCTGG
GTCGAGCTGC TGCTGGCGCG CACCCTGACC TCGGTGGACG CCAAGCCCAT CGCCGCAGTG
ATGACCCGTA CCGTGTCCGC ATCGGGCATC GACTGGGGCG TGCTGGCCGC TGCCGGGGTG
CTGACCATCA TCCCGGGGAT GCTGGTGATC TGGTTCGTTC GCAACCATGT GGCCAAGGGC
TTCGCCCTCG GCCGCGTGTA A
 
Protein sequence
MMLRKRLALL IYFLFLLVPI YWLLNMSFKS NTEILGGLSL WPQNFTLDNY RVIFTDRSWY 
EGYLNSLYYV SLNTLISLSV ALPAAYAFSR YRFLGDKHLF FWLLTNRMAP PAVFLLPFFQ
LYSSIGLFDT HIAVALAHCL FNVPLAVWIL EGFMSSVPKE IDETAYIDGY SFPKFFVKIF
IPLIRSGIGV TAFFCFMFSW VELLLARTLT SVDAKPIAAV MTRTVSASGI DWGVLAAAGV
LTIIPGMLVI WFVRNHVAKG FALGRV