| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2026 |
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| Symbol | |
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| ID | 5109917 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2237688 |
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| End bp | 2238917 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640503267 |
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| Product | twitching motility protein |
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| Protein accession | YP_001187519 |
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| Protein GI | 146307054 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.166451 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCTCC ACGCAATGCT CAAAGTCCTG TCCAGCCAGG ACGGTTCCGA TCTCTATCTG
TCCACCGGCG CGCCGCCCTG CGCCAAGTTC AACGGCGTGC TCAAGGCCCT CAGCCAGGAG
CCGCTGAAAT CCGGGGACGT GGCGGCCATT GCCGAGTCGA TCATGGATGG TGCCCAGCGC
GAGGAGTTCG AGCGCGAACT GGAGATGAAC CTGGCCATTT CCCTGGCCGG GGTAGGGCGT
TTCCGTATCA ACATCTTCAA GCAGCGCAAC GAAGTCTCGA TCGTGGCGCG CAACATCAAG
ATGGAGATTC CCCGCTTCGA GGACCTCAAA CTGCCGGAGG TGCTGCTCAG CACGGTGATG
GAGAAGCGCG GCCTGGTGCT GTTCGTCGGC GGTACCGGCT CTGGCAAGTC CACCTCCCTG
GCGGCGCTGA TCGACTACCG CAACCGCAAC AGCGGCGGGC ACATCATCAC CATCGAGGAC
CCGGTGGAAT ACGTGCACCG GCACAAGAAA TCGATCATCA ACCAGCGCGA GGTCGGGGTG
GACACCCGCA GCTTCCACGC CGCGCTGAAG AACACCCTGC GCCAGGCACC CGATGTGATC
CTGATCGGCG AGATCCGCGA CCGCGAGACC ATGGAGCACG CCCTGGCCTT CGCCGACACC
GGTCACCTGG CGATCTCCAC GCTGCACGCC AACAACGCCA ACCAGGCGCT GGACCGCATC
ATCAACTTCT TCCCCGAGGA GCGCCGCCCG CAGCTGCTCA ACGACCTGGG CAACAACCTC
AAGGCGTTCG TCTCCCAGCG CCTGGTCAAG ACCGTCGATG GCAAACGTCG GGCCGCGGTC
GAGGTCATGC TGGGCACCCC CACGGTGCGC GACCTGATCA AGCGCAACGA ATTCTCCGAG
CTCAAGGAGA TCATGGAGAA GTCGAAGAAC CTCGGCATGC AGACCTTCGA TCAGGCGCTG
ATCGATCTGG TCCACGAAGG CGCCATCGAC GAAGAGGAAG CGGTGAAGAA CGCCGATTCG
GCCAACAACG TGCGCCTGAA GCTCAAGCTC TACCGCGACA ACCCCGCCAA CGCCGCGCCG
CCGGCTGCCA GCGCTGCGCC AGCCCGGCCG GCTGTGGCGC CGACGTTAGC GCCGAAGGTG
GCCGACAGCG GCGACTGGGG CCTGGAGCTC AAGCTCGAGG ACATCGAACA GGAGCAGCCG
CCAGAAGACC CGGGGCGCAA GGGCATCTGA
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| Protein sequence | MDLHAMLKVL SSQDGSDLYL STGAPPCAKF NGVLKALSQE PLKSGDVAAI AESIMDGAQR
EEFERELEMN LAISLAGVGR FRINIFKQRN EVSIVARNIK MEIPRFEDLK LPEVLLSTVM
EKRGLVLFVG GTGSGKSTSL AALIDYRNRN SGGHIITIED PVEYVHRHKK SIINQREVGV
DTRSFHAALK NTLRQAPDVI LIGEIRDRET MEHALAFADT GHLAISTLHA NNANQALDRI
INFFPEERRP QLLNDLGNNL KAFVSQRLVK TVDGKRRAAV EVMLGTPTVR DLIKRNEFSE
LKEIMEKSKN LGMQTFDQAL IDLVHEGAID EEEAVKNADS ANNVRLKLKL YRDNPANAAP
PAASAAPARP AVAPTLAPKV ADSGDWGLEL KLEDIEQEQP PEDPGRKGI
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