| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2018 |
|---|
| Symbol | |
|---|
| ID | 5109909 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 2227372 |
|---|
| End bp | 2228250 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640503259 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001187511 |
|---|
| Protein GI | 146307046 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.132801 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.140237 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCGCC TGAACTTCCA TCACCTGCAC TATTTCTGGG CCGTGGCCAA GGAAGGCAAC
CTGACCCGCG CCGCGCAGTC ACTGCATGTG GCCCAGTCGG CGCTGTCGAC GCAGATTCGC
GCCCTCGAAG AGCAGCTTGG CCATCCACTG TTCATTCGTT CCGGGCGCAA CCTGCTGCTG
ACCGAGGCCG GGCGCCTGGT GCTGGATTAC GCCGAGAGCA TCTTCGCCCT CGGCAGCGAG
CTGCAGATGA CCCTGCAGGG CGCGCTGCAA GCCAACCGAC AGCTGCGTAT CGGTGCGGTG
GCGACCCTGT CGCGCAATTT CCAGGAAAAC CTGCTGCGGC CCTTTCTCGG CCGCGCCGAA
CTGCGCATCA CCCTCGAGTC CGGCAGCCTG GGCGAGTTGC TGGAACGCCT GGCCCTGCAC
AAGCTGGATG TGGTGCTGAC CAACCAGGCG GTGAGCAGCG ATGCCCAGCG GCCCTGGCGC
TGCCGTCTGC TGGACCGCCA GACGGTGTGC CTGGTCGGCC CGCCGCGCAC CACGGGGCAA
AGCTTCGAGC TGCGCCGCGA CCTGCCGCAG GCGCGCCTGA TCGTGCCGGG GCGCAGCAGC
GATATCCGCA GCCAGTTCGA GCTGTTCTGC GACAGTCACG ACCTGCAGCC GAACATCTGT
GCCGAGGTCG ACGACATGGC CATGCTGCGT CTGCTCGCGC GCGACTCGGG CGACCTTGCA
CTGCTGCCCG CGGTGGTGGT GCAGGATGAG CTGCAGGCCG GGCTGCTGCA GCTGTACGCG
GAGATTCCCG AGGTGGCCGA GCAGTTCTTC GCCGTCACCC TGCAGCGTCA CTTCAACCTC
AACATCCTCG ACGAGCTGCT CGCCCAGCGG CCCGGCTGA
|
|---|
| Protein sequence | MRRLNFHHLH YFWAVAKEGN LTRAAQSLHV AQSALSTQIR ALEEQLGHPL FIRSGRNLLL
TEAGRLVLDY AESIFALGSE LQMTLQGALQ ANRQLRIGAV ATLSRNFQEN LLRPFLGRAE
LRITLESGSL GELLERLALH KLDVVLTNQA VSSDAQRPWR CRLLDRQTVC LVGPPRTTGQ
SFELRRDLPQ ARLIVPGRSS DIRSQFELFC DSHDLQPNIC AEVDDMAMLR LLARDSGDLA
LLPAVVVQDE LQAGLLQLYA EIPEVAEQFF AVTLQRHFNL NILDELLAQR PG
|
|---|
| |