| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2010 |
|---|
| Symbol | |
|---|
| ID | 5109901 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 2220790 |
|---|
| End bp | 2221794 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640503251 |
|---|
| Product | D-cysteine desulfhydrase |
|---|
| Protein accession | YP_001187503 |
|---|
| Protein GI | 146307038 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2515] 1-aminocyclopropane-1-carboxylate deaminase |
|---|
| TIGRFAM ID | [TIGR01275] pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.152874 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.00891545 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAGCA CCGCCCTCGC CCGTTTCCCC CGTCTGCCGC TGGTTCCCCA GCCCACACCG
CTGCATCGCC TGCCGCGCCT TTCGCAACAA CTGGGCCGGG ATATCTGGGT CAAGCGCGAC
GACCTCACGC CGTTGGCGCT GGGCGGCAAC AAGGCGCGCA AACTGGAATT TCTCGCCGCC
GACGCGCAGG CCAAGGGCGC CGATGTGCTG GTCACGGCCG GCGCCATTCA GTCCAACCAT
GTGCGCCAGA CCGCTGCCGT GGCCGCGCAG TTGGGCCTGG GCTGCCTGGC CCTGCTGGAA
AACCCCATCG ACAGCCAGAG CGGCAACTAC CTCGGCAACG GCAACCGCCT GCTGCTCGAC
CTGTTCGGCG CCGAGGTGGA GCACGTGGCC AGCCTGGACA ATGCCGATCA GTTGCTGCAA
GCCGCCTGCG AGCGACTCAG CGCGGCCGGG CGGCGCCCCT ACCTGGTGCC CATCGGTGGT
TCCAATGCCC TCGGTGCGCT TGGCTACGTG CGCGGCGGGC TGGAGCTGGC CGAGCAGATC
GCAGACAGCG GCGAGCACTT CGCTGCCGTG GTGCTGGCCT CCGGCAGTGC CGGTACCCAT
GCCGGCCTGG CCCTGGCACT GCAGAGCGCA CAGCCCGACC TGCGGGTGGT CGGCGTGACC
GTCTCGCGCA GCGAGGCGGC GCAACGGCCC AAGGTGGAGA ACCTGCTGCA GGGCACGGCT
GAACTGCTCG GCGTGGCCGT GCCGCAAGGC CTGCAGGTGG AGCTGTGGGA CGACTACTTC
GCCCCGCGCT ATGGCGAGGC GAGTGCCGCC GGCCTGGCTG CAATCGAGCG GCTCGCGGGG
CTGGAAGCGC TGTTGCTTGA CCCGGTCTAC ACTGCCAAGG CCTTTGCCGG CCTGCTCGAC
GGTCTGGCGC GAGGCGCCTT CCCTGGCGAC GGTCCATTGC TGTTCCTGCA CACCGGCGGC
TCGCCTACTC TCTTCGCTTA TAAGGATTCG AATATAAATA AATAA
|
|---|
| Protein sequence | MLSTALARFP RLPLVPQPTP LHRLPRLSQQ LGRDIWVKRD DLTPLALGGN KARKLEFLAA
DAQAKGADVL VTAGAIQSNH VRQTAAVAAQ LGLGCLALLE NPIDSQSGNY LGNGNRLLLD
LFGAEVEHVA SLDNADQLLQ AACERLSAAG RRPYLVPIGG SNALGALGYV RGGLELAEQI
ADSGEHFAAV VLASGSAGTH AGLALALQSA QPDLRVVGVT VSRSEAAQRP KVENLLQGTA
ELLGVAVPQG LQVELWDDYF APRYGEASAA GLAAIERLAG LEALLLDPVY TAKAFAGLLD
GLARGAFPGD GPLLFLHTGG SPTLFAYKDS NINK
|
|---|
| |