Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2010 |
Symbol | |
ID | 5109901 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2220790 |
End bp | 2221794 |
Gene Length | 1005 bp |
Protein Length | 334 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640503251 |
Product | D-cysteine desulfhydrase |
Protein accession | YP_001187503 |
Protein GI | 146307038 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2515] 1-aminocyclopropane-1-carboxylate deaminase |
TIGRFAM ID | [TIGR01275] pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.152874 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.00891545 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCTCAGCA CCGCCCTCGC CCGTTTCCCC CGTCTGCCGC TGGTTCCCCA GCCCACACCG CTGCATCGCC TGCCGCGCCT TTCGCAACAA CTGGGCCGGG ATATCTGGGT CAAGCGCGAC GACCTCACGC CGTTGGCGCT GGGCGGCAAC AAGGCGCGCA AACTGGAATT TCTCGCCGCC GACGCGCAGG CCAAGGGCGC CGATGTGCTG GTCACGGCCG GCGCCATTCA GTCCAACCAT GTGCGCCAGA CCGCTGCCGT GGCCGCGCAG TTGGGCCTGG GCTGCCTGGC CCTGCTGGAA AACCCCATCG ACAGCCAGAG CGGCAACTAC CTCGGCAACG GCAACCGCCT GCTGCTCGAC CTGTTCGGCG CCGAGGTGGA GCACGTGGCC AGCCTGGACA ATGCCGATCA GTTGCTGCAA GCCGCCTGCG AGCGACTCAG CGCGGCCGGG CGGCGCCCCT ACCTGGTGCC CATCGGTGGT TCCAATGCCC TCGGTGCGCT TGGCTACGTG CGCGGCGGGC TGGAGCTGGC CGAGCAGATC GCAGACAGCG GCGAGCACTT CGCTGCCGTG GTGCTGGCCT CCGGCAGTGC CGGTACCCAT GCCGGCCTGG CCCTGGCACT GCAGAGCGCA CAGCCCGACC TGCGGGTGGT CGGCGTGACC GTCTCGCGCA GCGAGGCGGC GCAACGGCCC AAGGTGGAGA ACCTGCTGCA GGGCACGGCT GAACTGCTCG GCGTGGCCGT GCCGCAAGGC CTGCAGGTGG AGCTGTGGGA CGACTACTTC GCCCCGCGCT ATGGCGAGGC GAGTGCCGCC GGCCTGGCTG CAATCGAGCG GCTCGCGGGG CTGGAAGCGC TGTTGCTTGA CCCGGTCTAC ACTGCCAAGG CCTTTGCCGG CCTGCTCGAC GGTCTGGCGC GAGGCGCCTT CCCTGGCGAC GGTCCATTGC TGTTCCTGCA CACCGGCGGC TCGCCTACTC TCTTCGCTTA TAAGGATTCG AATATAAATA AATAA
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Protein sequence | MLSTALARFP RLPLVPQPTP LHRLPRLSQQ LGRDIWVKRD DLTPLALGGN KARKLEFLAA DAQAKGADVL VTAGAIQSNH VRQTAAVAAQ LGLGCLALLE NPIDSQSGNY LGNGNRLLLD LFGAEVEHVA SLDNADQLLQ AACERLSAAG RRPYLVPIGG SNALGALGYV RGGLELAEQI ADSGEHFAAV VLASGSAGTH AGLALALQSA QPDLRVVGVT VSRSEAAQRP KVENLLQGTA ELLGVAVPQG LQVELWDDYF APRYGEASAA GLAAIERLAG LEALLLDPVY TAKAFAGLLD GLARGAFPGD GPLLFLHTGG SPTLFAYKDS NINK
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