| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2008 |
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| Symbol | |
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| ID | 5109899 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2219256 |
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| End bp | 2219924 |
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| Gene Length | 669 bp |
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| Protein Length | 222 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640503249 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_001187501 |
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| Protein GI | 146307036 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.0198583 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.00681365 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGATCGAGT CCGCCCTGCA GCTGGCTCTG GAATCCGCGC CCTTTCTCCT CAAGGGCGCG
CTCTACACCG TGGTATTGAG CCTGGGCGGC ATGTTCTTCG GCCTGCTGCT CGGCTTCGTC
CTGGCGCTGC TTCGCCTCTA CGCCATCGCC CCGCTGCGCT GGTTCTCGCG CTTCTACGTG
TCGTTCTTTC GCGGCACGCC GCTGCTGGTG CAGCTGTTTC TGATCTACTA CGGCCTGCCG
CAGCTGGGTA TCCAGCTCGA CCCGCTGCCG GCCGCGCTGA TCGGCTTTTC CCTGAACATG
GCTGCCTACA CCTCGGAAAT CCTCCGCGCC GCCATCGCCA GCATCGACCG CGGCCAATGG
GAAGCCGCCG CCAGCATCGG CATGAGCAAG GCGCAGACCC TGTACCGCGC CATCCTTCCG
CAGGCGGCGC GCACCGCGCT GCCGCCCTTG GGCAACAGCT TCATCTCGCT GGTCAAGGAC
ACCGCCCTGG CCGCCACCAT CCAGGTGCCG GAACTGTTCC GCCAGGCGCA GCTGATCACC
GCGCGCACCT TCGAGATCTT CACCATGTAC CTGGCCGCCG CGCTGATCTA CTGGGCGCTG
GCCAGCGTCC TGGCACACTT CCAGGCGCGC CTGGAAGCCA GGGTCAACCG GCACGAGCAG
GACAACTGA
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| Protein sequence | MIESALQLAL ESAPFLLKGA LYTVVLSLGG MFFGLLLGFV LALLRLYAIA PLRWFSRFYV
SFFRGTPLLV QLFLIYYGLP QLGIQLDPLP AALIGFSLNM AAYTSEILRA AIASIDRGQW
EAAASIGMSK AQTLYRAILP QAARTALPPL GNSFISLVKD TALAATIQVP ELFRQAQLIT
ARTFEIFTMY LAAALIYWAL ASVLAHFQAR LEARVNRHEQ DN
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