Gene Pmen_1996 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1996 
Symbol 
ID5109887 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2204566 
End bp2205879 
Gene Length1314 bp 
Protein Length437 aa 
Translation table11 
GC content68% 
IMG OID640503237 
Productintegral membrane sensor signal transduction histidine kinase 
Protein accessionYP_001187489 
Protein GI146307024 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.540244 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.136551 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAGGTCGA TTCAGCGCCG GCTGAGCCTG GGACTGGCCG GTGCGCTGCT GCTGGTCGGA 
TTGATTCTGG CGCAGGCCAG TCTGTGGGTA TTCGACCGCG GCCTGCGTGC CTATCTGGAG
GAAGACCTGC GTGACGAGGC GCAGGGGCTG CTCGCCGCTC TGGTGCGGGG GCCGGCAGGG
CTGCAGCTGG ACGAGCGACG TCTGGACCCC TCATTTCAGC GGCAGTTTTC CGGGCACTAT
TTCCGCATCG ACTTCTCCGA CCGTAGCTGG CGTTCGCGCT CGCTCTGGGA CCGCGAGCTG
CTCAAGCCGG ATACCCAGGG CATGCAGGTG GAGCTGGGCG ATGGCCCGCA AGGTCAGCGT
CTGCTGATCT ACCGCGCCGA TTACCGCCGC TATGGCGAGA ACCTGTCGAT CAGCGTGGCC
CAGGACTATC AGCCGATCCT GCAGAGCTTT CGCCGCATGC AGTGGTTGGG GCTGGGCATG
GGCGGGGCGG CGCTGCTGCT GATTCTTGTC GCCCAGCGCT ACACCGTGCG CCGCGCGCTA
CGGCCGCTGG AGCAGGTGCG GCGGCAGATC GCCCAGCTGC AGCAGGGCCG CCGCTCCGAT
CTGGATGCCG AGGTGCCCGA GGAACTGGAG CCGCTGGTGG CGCAGATCAA TCACCTTCTG
GCTCATACCG AAGACACCCT CAAGCGCTCG CGCAACGCCC TGGGCAACCT TGGCCACGCC
CTGAAAACGC CCTTGGCGGT GCTGATCAGC CTGGCCGGAC GCGAGGAGCT GAGGGCACAT
CCGCAATTGC GCGCCAGCCT GCGCGAACAA CTGGAGCAGA TCGAGCAGCG TCTCAGCCGC
GAGCTGGGTC GTGCGCGTCT GGCCGGCGAG GTGCTGCCCG GCGCGCGTTT CGACTGTGCC
CAGGAGCTGC CCGGCCTGTT CGCCACCCTG GCGATGATTC ATGACCGCGG TTTGCATCTG
GAATGGCAGG CGCCGGAGGG CCTGATAGTG CCGCGCGACC GCGAGGATCT GCTGGAGCTG
CTGGGCAACC TGCTGGACAA CGCCTGCAAG TGGGCCGAGC AGCAGGTGCT GCTCTCGGTG
GAGGAGGTCG CCGACGGCTA TCGGCTGCTC GTCGATGACG ATGGCCCCGG CATCGATGCC
GAGCGGCGCG AGGCCGTGCT CGGCCGCGGT ACCCGTCTGG ACGAGCAGGT GGCAGGGCAT
GGCCTGGGCC TCGGTATCGT GCGCGATATC ATCGAGGCCT GGAACGGCCG TATCGAACTG
CTGGACAGCC CCTTGGGCGG GCTGCGAGTG GCGGTCAGCC TGCCACGGCG TTGA
 
Protein sequence
MRSIQRRLSL GLAGALLLVG LILAQASLWV FDRGLRAYLE EDLRDEAQGL LAALVRGPAG 
LQLDERRLDP SFQRQFSGHY FRIDFSDRSW RSRSLWDREL LKPDTQGMQV ELGDGPQGQR
LLIYRADYRR YGENLSISVA QDYQPILQSF RRMQWLGLGM GGAALLLILV AQRYTVRRAL
RPLEQVRRQI AQLQQGRRSD LDAEVPEELE PLVAQINHLL AHTEDTLKRS RNALGNLGHA
LKTPLAVLIS LAGREELRAH PQLRASLREQ LEQIEQRLSR ELGRARLAGE VLPGARFDCA
QELPGLFATL AMIHDRGLHL EWQAPEGLIV PRDREDLLEL LGNLLDNACK WAEQQVLLSV
EEVADGYRLL VDDDGPGIDA ERREAVLGRG TRLDEQVAGH GLGLGIVRDI IEAWNGRIEL
LDSPLGGLRV AVSLPRR