Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1985 |
Symbol | |
ID | 5109876 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 2183561 |
End bp | 2187037 |
Gene Length | 3477 bp |
Protein Length | 1158 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640503221 |
Product | DNA helicase/exodeoxyribonuclease V, gamma subunit |
Protein accession | YP_001187478 |
Protein GI | 146307013 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1330] Exonuclease V gamma subunit |
TIGRFAM ID | [TIGR01450] exodeoxyribonuclease V, gamma subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.18739 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.278857 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCACC TTGTCGCCAA ATGCTGGCAA ACTTGCGCTT CGATTTTCGA CAGGAGTCAG TCGATGTCCG CCAGCCCGGA GCTGTCCCCC GGCCTTATCG TCATTCACGG TAACCACCTC GAAGAGTTGC GTGCGCTGGC GGTGCAGTGG ATGCGGCGCT ATCCGCTGTG GCCGCTGGAG AACGAAGTGC TGCTGGTGCA AAGCAACGGC ATCGCCCAGT GGCTCAAGCT GGCGCTGGCC GAGCGTGATG GCTGCGGCAT CGCGGCGGCG CTGGATGTCG ATCTGCCAGC GCGCTTTCTC TGGCAGGCGT ACCGCAACGT GCTGGGCAAG GACGCGATTC CGCAAGAGTC GCCCCTGGAC AAGGCGCCGC TGACCTGGCG CCTGATGCGG CTGTTGCCGG GCCTGCTGGC CGAGGAGGCG TTTGCGCCCT TGCGCCGCTT CCTCGCCGAT GATCAGGACC TGCGCAAGCG CCACCAACTG GCCGAGCGTC TGGCGGATCT GTTCGACCAG TATCAGGTCT ACCGCGCCGA CTGGCTGGCC GACTGGGCCG CCGGGCAGGA TCGCCTGCGC ACCTCGCGCG GCGGCGAGCG GCCACTGGAG GGCGATTCGC GCTGGCAACC CGCGCTGTGG CGCGCCCTGC TGGCGGACGT TGGCGAGCAG CATCTGGCCG AAAGTCGCGC CGGCGTGCAT CCACGCTTCG TCGCCCGTCT GGCCGAGCTG GACGCGCCGC CAGCCGGACT GCCGCGGCGC ATCACCGTTT TCGGAATCTC TTCGTTGCCG GCACAGGTGC TGGAGGCGCT GGCGGCCATG GCGCGCTTCA GCCAGGTCAT GTTGTACGTA CACAACCCCT GTCAGCACCA CTGGGGCGAT ATCGTCGAGG ACAAGGACCT GCTGCGCCAC GAGTACCGTC GCCAGCAGCG CAAGGGCAGG CCGGGCGCGC AGATCGGTCT GTTCGAACAG GAGGACATGC ACCAGCACGG GCAGCCGCTG CTGGCAGCCT GGGGCAAGCA GGGGCGCGAT TACATCAACC TGTTGGATCA GTACGACGAG CCGCAGCGTT ACCGCGAGCA GTTCGACCGT ATCGACCTGT TCAGCCCGGC CAGTGAGAAC AGCCTGCTCG GCCAACTGCA GAACGACATC CTCGACCTGC GCCCGCTGGC GGAAACACGC AGCACTTGGC CTCCCGTCGA CCCCGTCAAA GATCATTCGC TGCGCTTTCA TATCGCCCAC AGCGCTCAGC GCGAGGTGGA GGTGCTGCAC GACCAGCTGC TCGCCAGTTT CAGCGAGGAC GCCACGCTAA GGCCGCGCGA CATCATCGTC ATGGTGCCCG ACGTCAATGC CTACGCACCG CATATCCAGG CCGTGTTCGG CCAGTTCGCC AGCGACGATC CGCGCTTCAT TCCCTTTACC CTGGCCGACC AGGGGCTGCG CGGCAAGGAG CCGATGGTCA TCGCACTGGA GCATTTGCTG CGCCTGCCGG ACAGCCGCTT CAGCGTCAGC GAGATTCTCG ATCTGCTGGA TGTCGCCGCG CTGCGTCAGC GCTTCGCCAT CACCGAGGAG CAGTTGCCCA CCCTGCGCCG CTGGCTGGAA GGCGCCGGTG TGCGCTGGGG GCTGGATTCG AGCCAGCGGC AGTCGCTGGG CCTGGGTGAG AACCTGGAGC AGAACACCTG GCGCTTCGGC CTGCGGCGCA TGCTGCTGGG CTACGCGGTG GGTACGGGTG ACGCCTTCGC CGGCATCGAG CCGTACGACG AAATTGGCGG GCTCGATGCC GCGCTGATCG GCCCGGTGAC GCGGCTGTTG GAAAGCCTCG ACCGGCACCT GCAGCAGCTG CGCGAGCCGG CCACGCCGGT GCGGTGGGGC GAGCGTCTGC GCAGTTTGCT CGACGACTTC TTTCAGCCGC AGAGCGACCG TGAAGAGGTA CTGACGACCC AGCTGCTCGA TGCGCTGGAT GCCTGGCTGG CGCTCTGCGA GGCCGCGACG CTGGGCGAAG CGCTGACCCT ACCGGTGGTG CGCGAGGCCT GGCTGGACGG GCTCGACCAG GGGCGGCTGA GCCAGCGTTT TCTCGCTGGT GCGGTGAATT TCTGCACCCT GATGCCGATG CGCGCGATTC CGTTCCGTCA GGTCTGCCTG CTGGGCATGA ACGATGGCGA CTATCCGCGC AGCCAGGCCC CGCTGGATTT CGACCTGATG GCCGGTGATT ACCGCCCCGG TGACCGCTCG CGCCGCGAGG ATGACCGCTA CCTGCTGCTG GAGGCGCTGC TGGCAGCGCG TGATCGCCTC TATATCAGCT GGGTAGGGCG CAGCATTCGC GACAACAGCG AGCGCCCGCC GTCCGTGCTG GTCGGCCAGC TGCGTGACCA TCTTGCCAGT GCCTGGACAT TGGCCGGTGG CGGCGATCTG CTGCACGGGC TGACCACCGA GCACCCCTTG CAACCCTTCA GTCGCCGCTA CTTCGATGGC GAGGGGCAGC TGTTCAGTTA TGCCCACGAG TGGGCAGCCC TGCATGGCCA GGTCTCGACC CACGAAAGTG CTGCGCCCTT GCCGGCCTGG GAGGAGGGGC TGCAGCTTAC GCCTGAACTG TTGCAGTCGT TCCTGCGCGA TCCGGTGAAG TGCTTCTTCA CTCGCCGCCT CAAGGTGTAT CTCGACGAAG AAGAGCAGGC GCAGCTCGAC AGCGAACCCT TCGCCCTCGA CGGCCTGCAG CGCTACCAGT TGCAGGAAGC GCTGCTCAAG GCGGCGATAG CAGGCGAGGG GGACAGCGAC GATGCGCTGA GGGCGGCAGC CGATCGCCTG CAACGTAGCG GCGTGCTGCC GCTGGCCGGT TTTGGCGAGC AGTACCGCAA CGCCCTGCTG GAGCCGCTGC CGGCGCAGGT GCAGCGCTAT CAGGGGCTTT GCCTGTGCTG GCCGAGCCTG CTGGAGTCGC CGCAGCGCCT GACTTTCGCC GCAGCCGGTG TTCAGCTCGA TGGCTGGCTT GCCGGCCTGC GGCAGAAAGC CGATGGCGGC CTGGCGCGCC TGGAGCTGCT GCCGGGTGCA CTGCACAAGG ACAAGAGTTG GAAGTGGCAT CGCTTGCTAC GGCCCTATGC GCTGCACGTC ATCGCCGCGG CCTGCGGCGT GCCGCTGACC ACGCTGCTGG TGGGGGAAGA TCGCAGTCTG GCCTTCGAAC CTGTACCGAT CGAGCATGCC GCGCGAGTTC TGACGGTCTG GCTGGACGCC TGGAGTGCCG GTATGCAGGC GCCGTTGCCG GTCGCCTTGA AAACCTCGCT GGCCTGGTTG CAGGACAACA ATGAGGACAA GGCTCGCAGC GTCTACGAGG GCGCCTACAA CCTCGCCGGT GAAGTCCAGG GTAGCGCCAG CCTGGCGAGG CAGTTCCCGG ACTATGCCAC ACTCACCGCC GATGGCCAGT TTCCGGCGTG GAGCGAACGG CTCTACCAGC CACTGCTCGA CAGCCATCCG CAAGCGCTCG AGGAGGACGC AGCATGA
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Protein sequence | MTHLVAKCWQ TCASIFDRSQ SMSASPELSP GLIVIHGNHL EELRALAVQW MRRYPLWPLE NEVLLVQSNG IAQWLKLALA ERDGCGIAAA LDVDLPARFL WQAYRNVLGK DAIPQESPLD KAPLTWRLMR LLPGLLAEEA FAPLRRFLAD DQDLRKRHQL AERLADLFDQ YQVYRADWLA DWAAGQDRLR TSRGGERPLE GDSRWQPALW RALLADVGEQ HLAESRAGVH PRFVARLAEL DAPPAGLPRR ITVFGISSLP AQVLEALAAM ARFSQVMLYV HNPCQHHWGD IVEDKDLLRH EYRRQQRKGR PGAQIGLFEQ EDMHQHGQPL LAAWGKQGRD YINLLDQYDE PQRYREQFDR IDLFSPASEN SLLGQLQNDI LDLRPLAETR STWPPVDPVK DHSLRFHIAH SAQREVEVLH DQLLASFSED ATLRPRDIIV MVPDVNAYAP HIQAVFGQFA SDDPRFIPFT LADQGLRGKE PMVIALEHLL RLPDSRFSVS EILDLLDVAA LRQRFAITEE QLPTLRRWLE GAGVRWGLDS SQRQSLGLGE NLEQNTWRFG LRRMLLGYAV GTGDAFAGIE PYDEIGGLDA ALIGPVTRLL ESLDRHLQQL REPATPVRWG ERLRSLLDDF FQPQSDREEV LTTQLLDALD AWLALCEAAT LGEALTLPVV REAWLDGLDQ GRLSQRFLAG AVNFCTLMPM RAIPFRQVCL LGMNDGDYPR SQAPLDFDLM AGDYRPGDRS RREDDRYLLL EALLAARDRL YISWVGRSIR DNSERPPSVL VGQLRDHLAS AWTLAGGGDL LHGLTTEHPL QPFSRRYFDG EGQLFSYAHE WAALHGQVST HESAAPLPAW EEGLQLTPEL LQSFLRDPVK CFFTRRLKVY LDEEEQAQLD SEPFALDGLQ RYQLQEALLK AAIAGEGDSD DALRAAADRL QRSGVLPLAG FGEQYRNALL EPLPAQVQRY QGLCLCWPSL LESPQRLTFA AAGVQLDGWL AGLRQKADGG LARLELLPGA LHKDKSWKWH RLLRPYALHV IAAACGVPLT TLLVGEDRSL AFEPVPIEHA ARVLTVWLDA WSAGMQAPLP VALKTSLAWL QDNNEDKARS VYEGAYNLAG EVQGSASLAR QFPDYATLTA DGQFPAWSER LYQPLLDSHP QALEEDAA
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