| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1985 |
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| Symbol | |
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| ID | 5109876 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2183561 |
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| End bp | 2187037 |
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| Gene Length | 3477 bp |
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| Protein Length | 1158 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640503221 |
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| Product | DNA helicase/exodeoxyribonuclease V, gamma subunit |
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| Protein accession | YP_001187478 |
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| Protein GI | 146307013 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1330] Exonuclease V gamma subunit |
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| TIGRFAM ID | [TIGR01450] exodeoxyribonuclease V, gamma subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.18739 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.278857 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCACC TTGTCGCCAA ATGCTGGCAA ACTTGCGCTT CGATTTTCGA CAGGAGTCAG
TCGATGTCCG CCAGCCCGGA GCTGTCCCCC GGCCTTATCG TCATTCACGG TAACCACCTC
GAAGAGTTGC GTGCGCTGGC GGTGCAGTGG ATGCGGCGCT ATCCGCTGTG GCCGCTGGAG
AACGAAGTGC TGCTGGTGCA AAGCAACGGC ATCGCCCAGT GGCTCAAGCT GGCGCTGGCC
GAGCGTGATG GCTGCGGCAT CGCGGCGGCG CTGGATGTCG ATCTGCCAGC GCGCTTTCTC
TGGCAGGCGT ACCGCAACGT GCTGGGCAAG GACGCGATTC CGCAAGAGTC GCCCCTGGAC
AAGGCGCCGC TGACCTGGCG CCTGATGCGG CTGTTGCCGG GCCTGCTGGC CGAGGAGGCG
TTTGCGCCCT TGCGCCGCTT CCTCGCCGAT GATCAGGACC TGCGCAAGCG CCACCAACTG
GCCGAGCGTC TGGCGGATCT GTTCGACCAG TATCAGGTCT ACCGCGCCGA CTGGCTGGCC
GACTGGGCCG CCGGGCAGGA TCGCCTGCGC ACCTCGCGCG GCGGCGAGCG GCCACTGGAG
GGCGATTCGC GCTGGCAACC CGCGCTGTGG CGCGCCCTGC TGGCGGACGT TGGCGAGCAG
CATCTGGCCG AAAGTCGCGC CGGCGTGCAT CCACGCTTCG TCGCCCGTCT GGCCGAGCTG
GACGCGCCGC CAGCCGGACT GCCGCGGCGC ATCACCGTTT TCGGAATCTC TTCGTTGCCG
GCACAGGTGC TGGAGGCGCT GGCGGCCATG GCGCGCTTCA GCCAGGTCAT GTTGTACGTA
CACAACCCCT GTCAGCACCA CTGGGGCGAT ATCGTCGAGG ACAAGGACCT GCTGCGCCAC
GAGTACCGTC GCCAGCAGCG CAAGGGCAGG CCGGGCGCGC AGATCGGTCT GTTCGAACAG
GAGGACATGC ACCAGCACGG GCAGCCGCTG CTGGCAGCCT GGGGCAAGCA GGGGCGCGAT
TACATCAACC TGTTGGATCA GTACGACGAG CCGCAGCGTT ACCGCGAGCA GTTCGACCGT
ATCGACCTGT TCAGCCCGGC CAGTGAGAAC AGCCTGCTCG GCCAACTGCA GAACGACATC
CTCGACCTGC GCCCGCTGGC GGAAACACGC AGCACTTGGC CTCCCGTCGA CCCCGTCAAA
GATCATTCGC TGCGCTTTCA TATCGCCCAC AGCGCTCAGC GCGAGGTGGA GGTGCTGCAC
GACCAGCTGC TCGCCAGTTT CAGCGAGGAC GCCACGCTAA GGCCGCGCGA CATCATCGTC
ATGGTGCCCG ACGTCAATGC CTACGCACCG CATATCCAGG CCGTGTTCGG CCAGTTCGCC
AGCGACGATC CGCGCTTCAT TCCCTTTACC CTGGCCGACC AGGGGCTGCG CGGCAAGGAG
CCGATGGTCA TCGCACTGGA GCATTTGCTG CGCCTGCCGG ACAGCCGCTT CAGCGTCAGC
GAGATTCTCG ATCTGCTGGA TGTCGCCGCG CTGCGTCAGC GCTTCGCCAT CACCGAGGAG
CAGTTGCCCA CCCTGCGCCG CTGGCTGGAA GGCGCCGGTG TGCGCTGGGG GCTGGATTCG
AGCCAGCGGC AGTCGCTGGG CCTGGGTGAG AACCTGGAGC AGAACACCTG GCGCTTCGGC
CTGCGGCGCA TGCTGCTGGG CTACGCGGTG GGTACGGGTG ACGCCTTCGC CGGCATCGAG
CCGTACGACG AAATTGGCGG GCTCGATGCC GCGCTGATCG GCCCGGTGAC GCGGCTGTTG
GAAAGCCTCG ACCGGCACCT GCAGCAGCTG CGCGAGCCGG CCACGCCGGT GCGGTGGGGC
GAGCGTCTGC GCAGTTTGCT CGACGACTTC TTTCAGCCGC AGAGCGACCG TGAAGAGGTA
CTGACGACCC AGCTGCTCGA TGCGCTGGAT GCCTGGCTGG CGCTCTGCGA GGCCGCGACG
CTGGGCGAAG CGCTGACCCT ACCGGTGGTG CGCGAGGCCT GGCTGGACGG GCTCGACCAG
GGGCGGCTGA GCCAGCGTTT TCTCGCTGGT GCGGTGAATT TCTGCACCCT GATGCCGATG
CGCGCGATTC CGTTCCGTCA GGTCTGCCTG CTGGGCATGA ACGATGGCGA CTATCCGCGC
AGCCAGGCCC CGCTGGATTT CGACCTGATG GCCGGTGATT ACCGCCCCGG TGACCGCTCG
CGCCGCGAGG ATGACCGCTA CCTGCTGCTG GAGGCGCTGC TGGCAGCGCG TGATCGCCTC
TATATCAGCT GGGTAGGGCG CAGCATTCGC GACAACAGCG AGCGCCCGCC GTCCGTGCTG
GTCGGCCAGC TGCGTGACCA TCTTGCCAGT GCCTGGACAT TGGCCGGTGG CGGCGATCTG
CTGCACGGGC TGACCACCGA GCACCCCTTG CAACCCTTCA GTCGCCGCTA CTTCGATGGC
GAGGGGCAGC TGTTCAGTTA TGCCCACGAG TGGGCAGCCC TGCATGGCCA GGTCTCGACC
CACGAAAGTG CTGCGCCCTT GCCGGCCTGG GAGGAGGGGC TGCAGCTTAC GCCTGAACTG
TTGCAGTCGT TCCTGCGCGA TCCGGTGAAG TGCTTCTTCA CTCGCCGCCT CAAGGTGTAT
CTCGACGAAG AAGAGCAGGC GCAGCTCGAC AGCGAACCCT TCGCCCTCGA CGGCCTGCAG
CGCTACCAGT TGCAGGAAGC GCTGCTCAAG GCGGCGATAG CAGGCGAGGG GGACAGCGAC
GATGCGCTGA GGGCGGCAGC CGATCGCCTG CAACGTAGCG GCGTGCTGCC GCTGGCCGGT
TTTGGCGAGC AGTACCGCAA CGCCCTGCTG GAGCCGCTGC CGGCGCAGGT GCAGCGCTAT
CAGGGGCTTT GCCTGTGCTG GCCGAGCCTG CTGGAGTCGC CGCAGCGCCT GACTTTCGCC
GCAGCCGGTG TTCAGCTCGA TGGCTGGCTT GCCGGCCTGC GGCAGAAAGC CGATGGCGGC
CTGGCGCGCC TGGAGCTGCT GCCGGGTGCA CTGCACAAGG ACAAGAGTTG GAAGTGGCAT
CGCTTGCTAC GGCCCTATGC GCTGCACGTC ATCGCCGCGG CCTGCGGCGT GCCGCTGACC
ACGCTGCTGG TGGGGGAAGA TCGCAGTCTG GCCTTCGAAC CTGTACCGAT CGAGCATGCC
GCGCGAGTTC TGACGGTCTG GCTGGACGCC TGGAGTGCCG GTATGCAGGC GCCGTTGCCG
GTCGCCTTGA AAACCTCGCT GGCCTGGTTG CAGGACAACA ATGAGGACAA GGCTCGCAGC
GTCTACGAGG GCGCCTACAA CCTCGCCGGT GAAGTCCAGG GTAGCGCCAG CCTGGCGAGG
CAGTTCCCGG ACTATGCCAC ACTCACCGCC GATGGCCAGT TTCCGGCGTG GAGCGAACGG
CTCTACCAGC CACTGCTCGA CAGCCATCCG CAAGCGCTCG AGGAGGACGC AGCATGA
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| Protein sequence | MTHLVAKCWQ TCASIFDRSQ SMSASPELSP GLIVIHGNHL EELRALAVQW MRRYPLWPLE
NEVLLVQSNG IAQWLKLALA ERDGCGIAAA LDVDLPARFL WQAYRNVLGK DAIPQESPLD
KAPLTWRLMR LLPGLLAEEA FAPLRRFLAD DQDLRKRHQL AERLADLFDQ YQVYRADWLA
DWAAGQDRLR TSRGGERPLE GDSRWQPALW RALLADVGEQ HLAESRAGVH PRFVARLAEL
DAPPAGLPRR ITVFGISSLP AQVLEALAAM ARFSQVMLYV HNPCQHHWGD IVEDKDLLRH
EYRRQQRKGR PGAQIGLFEQ EDMHQHGQPL LAAWGKQGRD YINLLDQYDE PQRYREQFDR
IDLFSPASEN SLLGQLQNDI LDLRPLAETR STWPPVDPVK DHSLRFHIAH SAQREVEVLH
DQLLASFSED ATLRPRDIIV MVPDVNAYAP HIQAVFGQFA SDDPRFIPFT LADQGLRGKE
PMVIALEHLL RLPDSRFSVS EILDLLDVAA LRQRFAITEE QLPTLRRWLE GAGVRWGLDS
SQRQSLGLGE NLEQNTWRFG LRRMLLGYAV GTGDAFAGIE PYDEIGGLDA ALIGPVTRLL
ESLDRHLQQL REPATPVRWG ERLRSLLDDF FQPQSDREEV LTTQLLDALD AWLALCEAAT
LGEALTLPVV REAWLDGLDQ GRLSQRFLAG AVNFCTLMPM RAIPFRQVCL LGMNDGDYPR
SQAPLDFDLM AGDYRPGDRS RREDDRYLLL EALLAARDRL YISWVGRSIR DNSERPPSVL
VGQLRDHLAS AWTLAGGGDL LHGLTTEHPL QPFSRRYFDG EGQLFSYAHE WAALHGQVST
HESAAPLPAW EEGLQLTPEL LQSFLRDPVK CFFTRRLKVY LDEEEQAQLD SEPFALDGLQ
RYQLQEALLK AAIAGEGDSD DALRAAADRL QRSGVLPLAG FGEQYRNALL EPLPAQVQRY
QGLCLCWPSL LESPQRLTFA AAGVQLDGWL AGLRQKADGG LARLELLPGA LHKDKSWKWH
RLLRPYALHV IAAACGVPLT TLLVGEDRSL AFEPVPIEHA ARVLTVWLDA WSAGMQAPLP
VALKTSLAWL QDNNEDKARS VYEGAYNLAG EVQGSASLAR QFPDYATLTA DGQFPAWSER
LYQPLLDSHP QALEEDAA
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