| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1969 |
|---|
| Symbol | |
|---|
| ID | 5109860 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2166068 |
|---|
| End bp | 2167222 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640503203 |
|---|
| Product | pyrroloquinoline quinone biosynthesis protein PqqE |
|---|
| Protein accession | YP_001187462 |
|---|
| Protein GI | 146306997 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0535] Predicted Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR02109] coenzyme PQQ biosynthesis protein E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.046264 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.222604 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACAGTT CTGGATCGAG CTTCGCTAAA GCAGGTCATG AACCAGGGCC ACCGCTTTGG
CTCCTGGCCG AGCTGACGTA TCGTTGCCCG CTGCAGTGCC CGTACTGTTC CAATCCCCTG
GACTTCGCCA AGCAGGGTGC CGAACTCAGC ACTGCCGAGT GGATCGAGGT GTTTCGCCAG
GCCCGTGAGC TGGGCGCGGC GCAGCTGGGC TTTTCCGGCG GCGAGCCGCT GGTGCGTCAG
GATCTGGCTG AGCTGATCGC GGCGGCGCGC GGCCTGGGCT ACTACACCAA CCTGATCACC
TCCGGTATCG GCCTGACCGA AGCACGTATC GCCGAGTTTG CCGATGCCGG GCTGGACCAT
ATCCAGATCA GCTTTCAGGC CGCCGACGAG GAGGTGAACA ACCTGCTGGC CGGCTCGAAG
AAGGCCTTCG CGCAGAAGCT GGCCATGGCC CGCGCGGTCA AGGCCCACGG CTACCCGATG
GTGCTCAACT TCGTCACCCA CCGGCACAAC ATCGACAATA TCGAGCGCAT CATCGAGCTG
TGCCTGGAGC TGGAGGCGGA CTTCGTCGAA CTCGCCACCT GCCAGTTCTA CGGCTGGGCC
GAGCTCAACC GCGCTGGATT GCTGCCAACC CGTGCGCAGC TGGAGCGCGC CGAGCGCATC
ACCAACCAGT GGCGCGACAA GCTGGCGGCC GAAAATCACC CGTGCAAGCT GATATTCGTC
ACCCCGGACT ATTACGAGGA GCGCCCCAAG GCCTGCATGA ACGGCTGGGG CAATCTGTTT
CTCGACATCA CCCCGGACGG CACCGCGCTG CCCTGTCACA GCGCGCGGCA GCTGCCGGTG
CAGTTTCCCA ATGTGCGCGA GCACAGCGTC GAACATATCT GGCGGCATTC CTTCGGCTTC
AACCGCTTCC GCGGCGACGA CTGGATGCCC GAGCCCTGCC GCAGCTGCGA TGAGAAGCAC
AAGGATTTCG GCGGCTGCCG CTGCCAGGCC TTCATGCTCA CCGGCGATGC CAGCAACGCC
GACCCGGTGT GTAGCAAGTC GGCGCACCAT GAGGTGATTC TTGCCGCGCG CCGCCAGGCC
GATGAGGCGC CGCTGGGGCT GGGCGAGCTG CAGTACCGCA ACGACAAGGC CTCGCGAATC
ATATGCAAGG CTTAG
|
|---|
| Protein sequence | MHSSGSSFAK AGHEPGPPLW LLAELTYRCP LQCPYCSNPL DFAKQGAELS TAEWIEVFRQ
ARELGAAQLG FSGGEPLVRQ DLAELIAAAR GLGYYTNLIT SGIGLTEARI AEFADAGLDH
IQISFQAADE EVNNLLAGSK KAFAQKLAMA RAVKAHGYPM VLNFVTHRHN IDNIERIIEL
CLELEADFVE LATCQFYGWA ELNRAGLLPT RAQLERAERI TNQWRDKLAA ENHPCKLIFV
TPDYYEERPK ACMNGWGNLF LDITPDGTAL PCHSARQLPV QFPNVREHSV EHIWRHSFGF
NRFRGDDWMP EPCRSCDEKH KDFGGCRCQA FMLTGDASNA DPVCSKSAHH EVILAARRQA
DEAPLGLGEL QYRNDKASRI ICKA
|
|---|
| |