| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1953 |
|---|
| Symbol | |
|---|
| ID | 5110080 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2149686 |
|---|
| End bp | 2150492 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640503187 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001187446 |
|---|
| Protein GI | 146306981 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0209316 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 0.951803 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGAGC TGATCAAACT GGCGAGAGCG GCGCAGCGCA CCGATGGCGC ACTGCCGTTT
TCGGTGTATT CGTCCTACAG GGAGCAGCGC ATTCTGAATG CGCCCATCAC CAAGGCGCTG
CTGATCTTCG TGTTGGCCGG CACCAAGCGG CTGGGTCGCA GGGATGAGAT CAACTGTCCA
ACCGGTAGTT TTCTCTTCCT GTCCAATGTC TCGGATATCG ACATGAGAAA TATTCCGGCG
GCGGAGTATT TCGCTGTGCT GATCGAGTTC GAATCCAGCG ATTTCGATTG TTTCAAGAGC
CAGCGAAGTG CCGAGACCCG GTACGTTCAG GGCAACCTCG ATATGAGATT GGCTAAGGCC
CTGATGCAAT TCATAGAATG GGCGCCTTAT GCTCCTCGCG ACCTATGGCA TTTGCGCAGG
CAGGAGTTGC TGCAGCTGAT TCATCTATCC GGCTACGGAG AGGTAGCCGG CCTTGTGGGG
CGGCCAAATT TCAGCCAACG ACTTCACGCT ATCGTCAATG AAGACATCTG CCATGACTGG
ACCATGGGAC GACTGGCCGA ACGCCTGGCG ATCAGTGAAT CGACCTTGCA TCGACGCTTG
AAGGCTGAAG GCACCGGGAT CAAGTCGATT GTCAGCAGAG CCAGATTAAG CCAAGGGTTG
TTCCTGGTGC AGACCACCAT GGACCCCATC GGGCGTATCG CCGAGCGTTG CGGCTACCAG
TCGCAATCGC GTTTCACCGA CAGGTTCAAG CAGCAGTTCG GCATTACCCC ACGGGAGCTG
AGGAAAACGC GCGAGCCTGG CGGTTGA
|
|---|
| Protein sequence | MQELIKLARA AQRTDGALPF SVYSSYREQR ILNAPITKAL LIFVLAGTKR LGRRDEINCP
TGSFLFLSNV SDIDMRNIPA AEYFAVLIEF ESSDFDCFKS QRSAETRYVQ GNLDMRLAKA
LMQFIEWAPY APRDLWHLRR QELLQLIHLS GYGEVAGLVG RPNFSQRLHA IVNEDICHDW
TMGRLAERLA ISESTLHRRL KAEGTGIKSI VSRARLSQGL FLVQTTMDPI GRIAERCGYQ
SQSRFTDRFK QQFGITPREL RKTREPGG
|
|---|
| |