| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1937 |
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| Symbol | |
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| ID | 5110065 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2131110 |
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| End bp | 2133494 |
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| Gene Length | 2385 bp |
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| Protein Length | 794 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640503172 |
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| Product | coenzyme PQQ biosynthesis protein PqqF |
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| Protein accession | YP_001187431 |
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| Protein GI | 146306966 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1025] Secreted/periplasmic Zn-dependent peptidases, insulinase-like |
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| TIGRFAM ID | [TIGR02110] coenzyme PQQ biosynthesis probable peptidase PqqF |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.487635 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 0.979365 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCATC TAGCTTCCGT CCCCATGCAG CGGCTGCGCC TGGCCAACGG CGCCGAGCTG
TGCGTGGCGC AGCAGCCCTG GGCCGAACGT GTGGGGATCT GCCTGCGGGT GGCGGCGGGC
AGTCACGACG AGCCGGCCGC GTACCCGGGG CTGGCGCATT TTCTCGAGCA TCTGCTGTTT
CTCGGCAGCC GCGGTTATGG CGCCGAGCAG GGGCTGATGG CCTATGCCCA GGGCTCTGGC
GGGCAGGTCA ACGCCTCGAC CCAGGCGCGC CATACCGATT TCGTCTGCGA GCTGCCGGCC
GAGCGCCTGC AGCCGGGGTT GGCGCGCCTG CTCGACATGT TGCGCTGGCC GCTGCTCGAT
GGCGCCGCAC AGCGGCGCGA GCGCGAGGTG CTGGATGCCG AGCATCAGGC GCGTAGCCAG
GACGCCGACA GCCGCATCGA TCACGCCCTC GGCCAGGCGC TGGCGGTGGG GCATCGCTGC
GGCGACTTCC TGGCCGGCGA TCGCACCAGC CTGGCGCTGG AGCAGAGCGC GTTCCAGGAG
GCGCTGCAGG GCTATCACCG CCGCCATTAC CAGGCCGGCA ACATGCGCCT GGCGCTGGTC
GGGCCGCAGC CGCTGGCTGA GCTGCTGGAG ATTGGCCGGG TCCTGCTGGA AGAGCTGCCG
GCGGATGAGG CGGTGGCGCG CGAAGCGCCG CCGTCCATGC TGCCGCTTCG GGCGCCGCGC
CTGGGCCTGC AGCATGCTGT CGAAGCGCTG TACCTGGGTT ACGCCGTGCA GCTGGATGAA
CCCGGGCTGA TGCCTGCGCT GGAGCTGCTG CTGGACGTGC TGCAGGACCC GGCACCCGGC
GGACTGCTTG CCGGCCTGCG CGCGGCGCGG CTGTGCCGAC AGCTGCAGGC GCGGGTGCTG
TACCGGCATG CCGGACAGTG TCTGCTGCGC CTGGACTTCG CTGGCGCCGA AGCGCAGCGG
GGCGGCCAAC TGATCGCCGA ACTGCAGGGC TGGATCGCCC GGGTGCGGAT GGATCCACTC
TGGCCGGCGC GTCTGGCCGA CTGGCGCCAG GCCCAGGCGT TGCGCCAGTT CGGAGCGGGG
CCGCTGGCAT TGGCGCGCAG CCTGCAGGAG CCCGATACGG ACGACGCCAG CCTGTTGCTC
AGGCTCGATG CCTTGCTTGT CCAGCTGGCC GAAGGCGCCG GGCTGATCGA ACTCGTTTGC
GACAAGCAGC AGCGGCCAGC GTGGCCGGCC ATCGGCCTGG CGCTGCCGCT GGCTGCATTG
CCGGCGCGCG AACTGCCCGC AGCGCGGTTG AGCGGAGGGC TGGCAGCGGT CGAATCGCTG
CTGGCGCTGA CCGACGCGGC GTCGCCCAGC CTGCCGCTTG CCCACGTGCG TCACCATGCG
GGAGCGGCCG CCGGCGGGCC GGCGGCGCTG CACTGGCGCG GCGAGATTGC CGGGCAGCAT
TCGCTGCCCC AGTTGCAGGC GATGCTGCAG GCGCGTATCG CCGATGTGCA ACGCGCCTGC
GAACGCCTGG GCGTCGCCTT GCAGCTGGGC GTCGAGCCGG GCGCCTGGGG CCTGGCGCTG
CGCGGCGCTG CGGCCCTGCT GCCGGCCTGT AGCGCGCGGC TGTTGCCGCT GTTGCTGGCG
CCGCTGACCG AGGTGGCCGA GTCGGTGCCG GAAGGCCTGC TGCTGCGCCA GTTGCTGCAG
CGCCTGCCGG AGCTGGGCGG TGCCCGGAGC GGCTTGGGTC TGCAAGGGCT CAGCGTCGGT
CTGGATGAGA GCGAGCGGGC GCAGCTGGAG GCGCTGTTCG CCGCGGTCGA GCCCTTGGCC
GCCGGGCAGC CGCCGGCGGC GTCAAACCAC GAGCTGCTGT GGCGCGAGGT GGCGCAGCCG
GGCAGTGATG CGGCGCTGGT GCTGCTATGC CCGCTGGCGG ATGACGAGCC GCGCAGCGAG
GCGGCCTGGC GCCTGCTCGG GCAACTGCTG CAGGGGGCCT TCTATCGCCG TCTGCGCGGC
GAGCTGCAAC TGGGCTATGC GCTGTTTGCC GGCTACCGCC AGGTGCAGGG CGAGCGTGCG
CTGCTGTTCG CCCTGCAGTC GCCGGTGTGC GAGGCGGCCG GCATCTTCGC GCATATCCGC
AGCTTCCTCG ACCAGCAGTG CCAGCAGATC GCCGAGCTGC CGGATGTGGA GTTCGAGCGC
TGCCGCGAGG AACTGGCGCA GGCTCTGCGA ACGCCCAAGG ACAATGTGGC GCGCGCCGAA
CAGCTGTGGC AACTACAGCT GGCCGGACTG AATGAAGAGC ACCCGCAACG GGTGCGCCAG
GCATTGGCTG AGCTGACGCA GGATGAGCTG CAGGCGGCCT ATGCGCAGTT GTTGCAAAGC
GGCAACTGGC GGGTGCTGGC CAGCAGGCCT GGGCCACACG CCTAA
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| Protein sequence | MSHLASVPMQ RLRLANGAEL CVAQQPWAER VGICLRVAAG SHDEPAAYPG LAHFLEHLLF
LGSRGYGAEQ GLMAYAQGSG GQVNASTQAR HTDFVCELPA ERLQPGLARL LDMLRWPLLD
GAAQRREREV LDAEHQARSQ DADSRIDHAL GQALAVGHRC GDFLAGDRTS LALEQSAFQE
ALQGYHRRHY QAGNMRLALV GPQPLAELLE IGRVLLEELP ADEAVAREAP PSMLPLRAPR
LGLQHAVEAL YLGYAVQLDE PGLMPALELL LDVLQDPAPG GLLAGLRAAR LCRQLQARVL
YRHAGQCLLR LDFAGAEAQR GGQLIAELQG WIARVRMDPL WPARLADWRQ AQALRQFGAG
PLALARSLQE PDTDDASLLL RLDALLVQLA EGAGLIELVC DKQQRPAWPA IGLALPLAAL
PARELPAARL SGGLAAVESL LALTDAASPS LPLAHVRHHA GAAAGGPAAL HWRGEIAGQH
SLPQLQAMLQ ARIADVQRAC ERLGVALQLG VEPGAWGLAL RGAAALLPAC SARLLPLLLA
PLTEVAESVP EGLLLRQLLQ RLPELGGARS GLGLQGLSVG LDESERAQLE ALFAAVEPLA
AGQPPAASNH ELLWREVAQP GSDAALVLLC PLADDEPRSE AAWRLLGQLL QGAFYRRLRG
ELQLGYALFA GYRQVQGERA LLFALQSPVC EAAGIFAHIR SFLDQQCQQI AELPDVEFER
CREELAQALR TPKDNVARAE QLWQLQLAGL NEEHPQRVRQ ALAELTQDEL QAAYAQLLQS
GNWRVLASRP GPHA
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