Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1931 |
Symbol | |
ID | 5110059 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2123286 |
End bp | 2124212 |
Gene Length | 927 bp |
Protein Length | 308 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640503166 |
Product | transaldolase B |
Protein accession | YP_001187425 |
Protein GI | 146306960 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0176] Transaldolase |
TIGRFAM ID | [TIGR00874] transaldolase |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.247297 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCTCCA AGCTGGAACA ACTCAAGCAG TTCACTACCG TGGTCGCCGA TACCGGTGAT CTCGACGCCA TCGCCCGCCT CAAGCCGGTG GATGCCACCA CCAATCCCTC CCTGCTGCTC AAGGCCGCAT CGCTGCCGGG CTACGCCGAT CTCCTGAAAC AGGCGGTCAG CACCGGCAAA GGTGATCCGG GTCTGGCCTG CGACCACTTC GCCGTTGCCG TTGGCCAGGA GATTCTCAAG GTCATTCCCG GGCGCATTTC CACCGAGGTG GATGCCCGCC TGTCGTTCGA TACCGGCGCC ACCCTGCTGC GCGCCGAGCG CCTGATCGGC CTCTATGAGC AGGCCGGCAT CGGCCGTGAA CGGGTGCTGA TCAAGATCGC CTCGACCTGG GAAGGCATTC GCGCTGCCGA GCAGCTGGAA AAATCCGGCG TGCAGACCAA CCTCACCCTG CTCTTCTCCT TCGCCCAGGC GCAAGCGTGC GCCGATGCCG GCGTATTCCT CATCTCGCCT TTCGTCGGCC GCATCTACGA CTGGTACAAG AAAACCGAGG GCCGTGACTT TGTCGGCAGC GAAGATCCGG GCGTGCAGTC GGTCAGCCGC ATCTACGACT ACTACAAGGC CAACGGTTAC GACACCGTGG TGATGGGGGC GAGCTTCCGC AACCTCGGCC AGATCGAAGC GCTGGCCGGC TGCGATCGCC TGACCATCAG TCCCGAGTTG CTGCAGAAGC TGGCCGAGGA TGAGGGCGAA CTGAGCCGCA AGCTTGCTCC GGGCGGCGCT GGCGAAGCTC GTCAGACGCT GGACGAAAGC GCCTTCCGTT GGGCGTTGAA CGAAGATGCG ATGGCCACCG AGAAACTGGC CGAGGGCATT CGCCTGTTCG CCCGTGACCA GGAAAAGCTC GAGGCACTGC TGGCCGCCAA GGCCTGA
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Protein sequence | MTSKLEQLKQ FTTVVADTGD LDAIARLKPV DATTNPSLLL KAASLPGYAD LLKQAVSTGK GDPGLACDHF AVAVGQEILK VIPGRISTEV DARLSFDTGA TLLRAERLIG LYEQAGIGRE RVLIKIASTW EGIRAAEQLE KSGVQTNLTL LFSFAQAQAC ADAGVFLISP FVGRIYDWYK KTEGRDFVGS EDPGVQSVSR IYDYYKANGY DTVVMGASFR NLGQIEALAG CDRLTISPEL LQKLAEDEGE LSRKLAPGGA GEARQTLDES AFRWALNEDA MATEKLAEGI RLFARDQEKL EALLAAKA
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