Gene Pmen_1931 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1931 
Symbol 
ID5110059 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2123286 
End bp2124212 
Gene Length927 bp 
Protein Length308 aa 
Translation table11 
GC content64% 
IMG OID640503166 
Producttransaldolase B 
Protein accessionYP_001187425 
Protein GI146306960 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0176] Transaldolase 
TIGRFAM ID[TIGR00874] transaldolase 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.247297 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTCCA AGCTGGAACA ACTCAAGCAG TTCACTACCG TGGTCGCCGA TACCGGTGAT 
CTCGACGCCA TCGCCCGCCT CAAGCCGGTG GATGCCACCA CCAATCCCTC CCTGCTGCTC
AAGGCCGCAT CGCTGCCGGG CTACGCCGAT CTCCTGAAAC AGGCGGTCAG CACCGGCAAA
GGTGATCCGG GTCTGGCCTG CGACCACTTC GCCGTTGCCG TTGGCCAGGA GATTCTCAAG
GTCATTCCCG GGCGCATTTC CACCGAGGTG GATGCCCGCC TGTCGTTCGA TACCGGCGCC
ACCCTGCTGC GCGCCGAGCG CCTGATCGGC CTCTATGAGC AGGCCGGCAT CGGCCGTGAA
CGGGTGCTGA TCAAGATCGC CTCGACCTGG GAAGGCATTC GCGCTGCCGA GCAGCTGGAA
AAATCCGGCG TGCAGACCAA CCTCACCCTG CTCTTCTCCT TCGCCCAGGC GCAAGCGTGC
GCCGATGCCG GCGTATTCCT CATCTCGCCT TTCGTCGGCC GCATCTACGA CTGGTACAAG
AAAACCGAGG GCCGTGACTT TGTCGGCAGC GAAGATCCGG GCGTGCAGTC GGTCAGCCGC
ATCTACGACT ACTACAAGGC CAACGGTTAC GACACCGTGG TGATGGGGGC GAGCTTCCGC
AACCTCGGCC AGATCGAAGC GCTGGCCGGC TGCGATCGCC TGACCATCAG TCCCGAGTTG
CTGCAGAAGC TGGCCGAGGA TGAGGGCGAA CTGAGCCGCA AGCTTGCTCC GGGCGGCGCT
GGCGAAGCTC GTCAGACGCT GGACGAAAGC GCCTTCCGTT GGGCGTTGAA CGAAGATGCG
ATGGCCACCG AGAAACTGGC CGAGGGCATT CGCCTGTTCG CCCGTGACCA GGAAAAGCTC
GAGGCACTGC TGGCCGCCAA GGCCTGA
 
Protein sequence
MTSKLEQLKQ FTTVVADTGD LDAIARLKPV DATTNPSLLL KAASLPGYAD LLKQAVSTGK 
GDPGLACDHF AVAVGQEILK VIPGRISTEV DARLSFDTGA TLLRAERLIG LYEQAGIGRE
RVLIKIASTW EGIRAAEQLE KSGVQTNLTL LFSFAQAQAC ADAGVFLISP FVGRIYDWYK
KTEGRDFVGS EDPGVQSVSR IYDYYKANGY DTVVMGASFR NLGQIEALAG CDRLTISPEL
LQKLAEDEGE LSRKLAPGGA GEARQTLDES AFRWALNEDA MATEKLAEGI RLFARDQEKL
EALLAAKA