| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1907 |
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| Symbol | |
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| ID | 5110035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2097777 |
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| End bp | 2099150 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640503138 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_001187401 |
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| Protein GI | 146306936 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.0742597 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.100602 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCACCG ACACTCGCCT TGGCCGCGTG CGCACGGAAC TGCGCAGCCT GCTCATCTTG
GCCACGCCCA TCATCATCGC CCAGCTGGCG CATACCGCCA TGGGCTTCGT CGATACGCTG
ATGGCCGGGC GTGTCAGCCC GCAGGACCTG GCCGCCGTGG CGCTGGGCAA CTCGATCTGG
GTGCCGGTGT TCCTGCTGAT GACCGGCATC CTGCTGGCCA CCACGCCCAA GGTGGCGCAG
CGCTTCGGTG CCGGCGAAGA GGCAGACATC GGCCCGCTGG TGCGTCAGGC CCTGTGGCTG
GCTCTGGCCG TGGGCGGCGG CGCGGCGACG CTGCTGTGGA ACGCCGAGTT CATCCTGCGC
ATCATGAACG TCGACCCGGC GCTGATCACC CCGGCCATGG GCTACCTGCG CGCCGTGGCC
TGCGGCTTCC CGGCGGTGGC GCTGTATCAC GTGCTGCGCT GCTTCAGCGA TGGCCTCGGC
CATACCCGTC CGGCCATGGT GCTGGGCATC CTCGGCCTGT TGCTCAACAT TCCGGCCAAC
TACATCTTCA TCTACGGCAA GTTCGGCCTG CCGGCCATGG GCGGTGTCGG CTGCGGCTGG
GCAACGGCGT TGGTGATGGG CTTCATGCTG ATCGGCATGC TGGTCTGGGT GAAGTGGGCG
CCCTACTACC TTGCCAGCGC GCTGTTCACC CATTTCGAGT GGCCACAGTG GCCGGTGATC
AAGCGCCTGC TGAGCATTGG CGTGCCGATC GGCATCGCGG TATTTGCCGA ATCGAGCATC
TTCTCGGTGA TCGCCCTGCT GATCGGCGGC CTCGGCGCCA CCGTGGTCGC CGGGCATCAG
ATCGCCCTGA ATTTCAGCTC CATGGTGTTC ATGATTCCCT ACTCACTGGC CATGGCCGCG
ACGGTGCGCG TCGGCCAGGC GCTGGGCCGC GGCCAGCCGC GCGAGGCGCG CTTCGCCGCT
GGGGTGAGCA TGGGCGTGGC ACTGGGTTAC GCCTGCATAT CGGCCAGCCT GATGCTCCTG
CTGCGCGAAC AGATCGCGCA GATCTATACC CCGGACCAGG CGGTAATCAC GGTGGCAGCG
ACGCTGATCG TGTACTCGGC CCTGTTCCAG TTCTCCGACG CCATCCAGGT CACCGCCGCC
GGCGCCCTGC GCGGCTACCA GGACACCCGC ATCACCATGC TGCTGACCCT GTTCGCCTAC
TGGGGCATCG GTCTGCCGGT GGGCTATGCG CTCGGGCTGT CCGACTGGCT GGGCGAGCCG
AGCGGCCCCA GCGGCCTGTG GCAGGGCCTG GTGGTCGGGC TGACCTGCGC GGCTGTGATG
CTGGCCATTC GGCTGGCGCG CAGTGCACGC AAGCGGATTC GCGCGGCGAC CTGA
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| Protein sequence | MSTDTRLGRV RTELRSLLIL ATPIIIAQLA HTAMGFVDTL MAGRVSPQDL AAVALGNSIW
VPVFLLMTGI LLATTPKVAQ RFGAGEEADI GPLVRQALWL ALAVGGGAAT LLWNAEFILR
IMNVDPALIT PAMGYLRAVA CGFPAVALYH VLRCFSDGLG HTRPAMVLGI LGLLLNIPAN
YIFIYGKFGL PAMGGVGCGW ATALVMGFML IGMLVWVKWA PYYLASALFT HFEWPQWPVI
KRLLSIGVPI GIAVFAESSI FSVIALLIGG LGATVVAGHQ IALNFSSMVF MIPYSLAMAA
TVRVGQALGR GQPREARFAA GVSMGVALGY ACISASLMLL LREQIAQIYT PDQAVITVAA
TLIVYSALFQ FSDAIQVTAA GALRGYQDTR ITMLLTLFAY WGIGLPVGYA LGLSDWLGEP
SGPSGLWQGL VVGLTCAAVM LAIRLARSAR KRIRAAT
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