| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1854 |
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| Symbol | rpsA |
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| ID | 5109984 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2043641 |
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| End bp | 2045323 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640503086 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_001187350 |
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| Protein GI | 146306885 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.229903 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAAA GCTTTGCAGA ACTTTTTGAA GAAAGCCTGA AATCCCTCGA CATGCAGCCG
GGCGCCATCA TCACCGGCAT CGTGGTCGAC ATCGACGGTG ACTGGGTTAC CGTCCACGCC
GGCCTGAAGT CCGAGGGCGT CATCCCGCTC GACCAGTTCT TCAACGAACA AGGCGAGCTG
ACCATCAAGG TCGGTGACGA AGTCCACGTT GCGCTGGACG CGGTTGAAGA TGGCTTCGGT
GAAACCAAGC TGTCCCGCGA GAAAGCCAAG CGCGCTGAAT CCTGGCTGGT TCTGGAAGCT
GCGTTCAACG CTGAAGAAGT GGTCAAGGGT GTTATCAACG GTAAGGTCAA AGGCGGCTTC
ACCGTTGACG TCAACGGTAT CCGCGCGTTC CTGCCGGGTT CCCTGGTTGA CGTCCGTCCG
GTGCGTGATA CCACTCACCT GGAAGGCAAA GAGCTGGAAT TCAAGGTCAT CAAGCTGGAC
CAGAAGCGCA ACAACGTTGT CGTTTCCCGT CGCAGCGTCC TGGAAGCCGA GAACAGCGCC
GAGCGCGAAG CTCTGCTGGA ATCCCTGCAG GAAGGCCAGC AAGTCAAAGG TATCGTCAAG
AACCTCACCG ACTACGGTGC GTTCGTTGAC CTGGGCGGCG TAGACGGCCT GCTGCACATC
ACCGACATGG CTTGGAAGCG CATCAAGCAC CCGTCCGAGA TCGTCAACGT TGGCGACGAG
ATCGACGTCA AGGTTCTGAA GTACGATCGC GAGCGTAACC GCGTATCCCT GGGCCTGAAG
CAGCTGGGCG AAGATCCGTG GGTTGCCATC AAGGCTCGTT ACCCGGAGAA CACCCGCGTC
ATGGCGCGCG TCACCAACCT GACCGACTAC GGCTGCTTCG CTGAGCTGGA AGAAGGCGTT
GAAGGTCTGG TGCACGTTTC CGAAATGGAC TGGACCAACA AGAACATCCA CCCGTCGAAG
GTCGTCAACG TCGGCGACGA AGTGGAAGTC ATGGTTCTGG ACATCGACGA AGAGCGTCGT
CGTATCTCCC TGGGTATCAA GCAGTGCAAG ACCAACCCGT GGGAAGACTT CTCCGGTCAG
TTCAACAAGG GTGACAAGAT CTCCGGCACC ATCAAGTCGA TCACCGATTT CGGTATCTTC
ATTGGTCTGG ACGGCGGCAT CGACGGCCTG GTTCACCTGT CCGACATCTC CTGGAACGAA
GCCGGCGAAG AAGCCGTGCG TCGCTTCAAG AAGGGCGACG AGCTGGAAAC CGTCATCCTG
TCGGTTGACC CGGAGCGCGA GCGCATCTCC CTGGGCATCA AGCAACTGGA AGACGATCCG
TTCAGCAACT ACGTCTCCCT CAACGACAAG GGCACCATCG TCCGCGGCGT TGTGAAGGAA
GTAGATGCTA AGGGCGCCAT CATCGACCTG GGCAACGAGA TCGAAGCTAC CCTGAAAGCC
TCCGAAATCA GCCGTGACCG CGTTGAAGAC GCGCGCAACG TCCTGAAGGA AGGCGACGAA
GTAGAAGCCA AGATCATCAG CGTCGACCGC AAGTCCCGCG TTATCAGCCT GTCCATCAAG
TCGAAAGACG TCGAGGACGA GAAGGACGCG ATGAAGGAAC TGCGTAACAA GCAAGACGTT
GAAAGCACCG GCCCGACCAC CATCGGTGAT CTGATCCGTG CTCAGATGGA AAACCAGAAC
TAA
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| Protein sequence | MSESFAELFE ESLKSLDMQP GAIITGIVVD IDGDWVTVHA GLKSEGVIPL DQFFNEQGEL
TIKVGDEVHV ALDAVEDGFG ETKLSREKAK RAESWLVLEA AFNAEEVVKG VINGKVKGGF
TVDVNGIRAF LPGSLVDVRP VRDTTHLEGK ELEFKVIKLD QKRNNVVVSR RSVLEAENSA
EREALLESLQ EGQQVKGIVK NLTDYGAFVD LGGVDGLLHI TDMAWKRIKH PSEIVNVGDE
IDVKVLKYDR ERNRVSLGLK QLGEDPWVAI KARYPENTRV MARVTNLTDY GCFAELEEGV
EGLVHVSEMD WTNKNIHPSK VVNVGDEVEV MVLDIDEERR RISLGIKQCK TNPWEDFSGQ
FNKGDKISGT IKSITDFGIF IGLDGGIDGL VHLSDISWNE AGEEAVRRFK KGDELETVIL
SVDPERERIS LGIKQLEDDP FSNYVSLNDK GTIVRGVVKE VDAKGAIIDL GNEIEATLKA
SEISRDRVED ARNVLKEGDE VEAKIISVDR KSRVISLSIK SKDVEDEKDA MKELRNKQDV
ESTGPTTIGD LIRAQMENQN
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