Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1852 |
Symbol | |
ID | 5109982 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 2040591 |
End bp | 2042831 |
Gene Length | 2241 bp |
Protein Length | 746 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640503084 |
Product | bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase |
Protein accession | YP_001187348 |
Protein GI | 146306883 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0128] 5-enolpyruvylshikimate-3-phosphate synthase [COG0287] Prephenate dehydrogenase |
TIGRFAM ID | [TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGACTGTAA CCGCAGTGCA ATCGAGCGCC CCTAAGATCG GCCGCCTGGT GGTGGTCGGC CTCGGTCTGA TCGGCGGCTC CTTCGCCAAG GGCTTGCGCG CGCGCGGCCT GTGCCGTGAG GTGGTGGGCG TCGATCTGGA TGCCGAATCG CGCCGCCTGG CCGTGCAGTT GGGGGTGGTC GATCGTTGCG AGACCGATCT GGCGGCCGCC TGTCAGGGGG CCGAGGTGAT CCAGCTGGCG GTGCCTATCC TGGCCATGGA AAAGCTGCTG GCCGAACTGG CCAAGCTAGA CTTGGGCGAC GCCGTGCTGA CCGACGTCGG TAGTGCCAAG GGCAACGTGG TGCGCGCTGC GCGCCTGGCG TTTCAGGGCA AAACCGTGCG GCTGGTGCCT GGTCATCCCA TCGCGGGGTC CGAGCAGAGC GGTGTGGAGG CTGCCAACGC GGAGCTGTTC CGTCGCCACA AGGTTATCCT GACACCCTGC GAGCACAGCG ACGAGGCCGC GCTAGCCTTG GTGGAGAGCC TGTGGCGCGA GCTGGGTGCG GACGTCGAGA CGATGGAGGT AGAACACCAC GACCAGGTGC TCGCCGCCAC CAGCCACCTG CCGCACCTGT TGGCCTTCAC CCTGGTCGAC TCGCTGGCCA AGCGCAGCGA GAACCTGGAA ATTTTCCGCT ATGCCGCTGG CGGCTTCCGC GACTTCACGC GGATCGCCGG CAGTGACCCG GTGATGTGGC ACGATATCTT CCTCGCCAAC CGCGAGGCGG TGCTGCGCAC ACTGGATACA TTTCGCGACG ACCTCGACGC CTTGCGCGAC GCGGTCGACG CCGGGGATGG GCATCAACTC CTGGGCGTGT TCACCCGCGC CCGCGTTGCC CGCGAACATT TCAGCAAAAT TCTGGCCCGC AGGGCCTATG TGGACGCTAT GCACTCGACC GATCTGATTT TCCTGGCAAA ACCCGGTAGC AGCCTGTCCG GACGCATTCG TGTGCCCGGC GACAAATCCA TCTCGCATCG TTCGATCATG CTGGGTTCGC TGGCTGAAGG CACCACCGAG GTCGAAGGCT TCCTCGAAGG CGAGGACGCC CTGGCCACCC TGCAGGCGTT CCGCGACATG GGCGTGGTCA TCGAAGGCCC GCACCACGGC CGCGTGACCA TTCACGGCGT TGGTCTCAAG GGCCTGAAGG CTCCGGCTGG CCCGCTGTAC ATGGGCAACT CCGGCACCTC CATGCGCCTG CTCTCCGGCC TGCTCGCTGC ACAGCCGTTC GACACCGTGC TGACCGGCGA TGCCTCGCTG TCCAAGCGCC CGATGAATCG CGTGGCCAAG CCGCTGCGCG AGATGGGCGC AGTGATCGAG ACTGGTCCGG AAGGCCGTCC GCCGCTGACC ATCAAGGGCG GCCAGCGCCT GACCGGCATG GACTACGAAA TGCCGATGGC CAGCGCCCAG GTCAAATCCT GCCTGCTGCT GGCCGGCCTG TATGCGGCAG GCCGCACCTC GGTGACCGAG CCGGCGCCGA CCCGTGACCA CACCGAGCGC ATGCTGCGCG GCTTCGGCTA CCCGGTGAGC GTGGAGGGCA GCACCGCCAG CGTCGAGTCC GGCCACAAGC TGACCGCCAC GCGTATCGAA GTGCCCGCCG ATATTTCCTC GGCCGCCTTC TTCCTGGTCG CGGCGAGCAT CGCCGAAGGC TCCGAGCTGG TGCTCGAGCA CGTCGGCATC AACCCGACCC GCACCGGGGT GATCGATATC CTCAAACTGA TGGGCGGCGA TATCACCCTG GAAAACCAGC GTGAGGTGGG TGGCGAGCCG GTGGCCGATA TCCGCGTGCG TAGCGCCAAA CTCAAAGGCA TCGACATTCC CGAAGACCTG GTGCCCCTGG CCATCGACGA GTTCCCGGTG CTGTTCGTCG CCGCCGCCTG CGCAGAAGGC CGCACCGTGC TGCGTGGCGC CGAGGAGCTG CGGGTCAAGG AGTCCGACCG CATCCAGGTC ATGGCCGACG GCCTGATCAC CCTGGGCGTC AAGGCCGAGC CGACCCCCGA CGGCATCGTT ATCGAAGGCG GCTCTATCGG CGGTGGCGAG GTCTGGGCCC ATGGCGACCA CCGCATCGCC ATGTCCTTCA GCGTCGCCTC GCTGCGCGCC AGCGCGCCGA TCCGCATCCA CGACTGCGCC AACGTCGCCA CCTCTTTCCC CAACTTCCTC GCGCTGGCGG CTGAAGTCGG CATCCAGGTG GCAGAAGAGG GCAAGGCATG A
|
Protein sequence | MTVTAVQSSA PKIGRLVVVG LGLIGGSFAK GLRARGLCRE VVGVDLDAES RRLAVQLGVV DRCETDLAAA CQGAEVIQLA VPILAMEKLL AELAKLDLGD AVLTDVGSAK GNVVRAARLA FQGKTVRLVP GHPIAGSEQS GVEAANAELF RRHKVILTPC EHSDEAALAL VESLWRELGA DVETMEVEHH DQVLAATSHL PHLLAFTLVD SLAKRSENLE IFRYAAGGFR DFTRIAGSDP VMWHDIFLAN REAVLRTLDT FRDDLDALRD AVDAGDGHQL LGVFTRARVA REHFSKILAR RAYVDAMHST DLIFLAKPGS SLSGRIRVPG DKSISHRSIM LGSLAEGTTE VEGFLEGEDA LATLQAFRDM GVVIEGPHHG RVTIHGVGLK GLKAPAGPLY MGNSGTSMRL LSGLLAAQPF DTVLTGDASL SKRPMNRVAK PLREMGAVIE TGPEGRPPLT IKGGQRLTGM DYEMPMASAQ VKSCLLLAGL YAAGRTSVTE PAPTRDHTER MLRGFGYPVS VEGSTASVES GHKLTATRIE VPADISSAAF FLVAASIAEG SELVLEHVGI NPTRTGVIDI LKLMGGDITL ENQREVGGEP VADIRVRSAK LKGIDIPEDL VPLAIDEFPV LFVAAACAEG RTVLRGAEEL RVKESDRIQV MADGLITLGV KAEPTPDGIV IEGGSIGGGE VWAHGDHRIA MSFSVASLRA SAPIRIHDCA NVATSFPNFL ALAAEVGIQV AEEGKA
|
| |