| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1844 |
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| Symbol | |
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| ID | 5109974 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2030051 |
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| End bp | 2030722 |
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| Gene Length | 672 bp |
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| Protein Length | 223 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640503076 |
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| Product | phosphoglycolate phosphatase |
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| Protein accession | YP_001187340 |
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| Protein GI | 146306875 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.0203973 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.771348 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTTTGC GCGCAGTACT GTTCGACATG GACGGCACCC TGCTCGACTC GGCGCCGGAC
TTTATTGCCG TCACTCAGGC CATGCGGAGC GCGCGGGGCC TGCCGCCGCT GGCGGACAAG
GCCATTCGCG ACCAGGTGTC GGGAGGCGCG CGCGCCATGG TTGCCTGCGC CTTCGCTGAA
GACCCGGATT CGGCCGCCTT CGAGACCCTG CGCCAGGAGT TCCTCGAACG TTATCAGGAG
CATTGCGCGG TACTGACTCG CCCCTTCGAC GGCATCGAAG CGCTGCTCGC CGACATCGAA
CAGGCGCGCC TGCCGTGGGG CGTGGCCACC AACAAGCCGC TGCGCTACGC CGAGCCGATC
ATGCATCGCC TGAATCTCGC CGAGCGCTCG GCGGTGCTGG TGTGCCCGGA TCACGTGGCG
CTGAGCAAGC CCGCACCGGA CATGCTGCTG CTGGCCTGCG AGAAGATCGG CGTACAGCCG
CAAGAGGTGC TGTTCATCGG TGACGACGAG CGCGACATCG AATCCGGACG CGCCGCCGGC
TGCAGAACCG CAGCGGTCAC CTACGGTTAT ATCCACCCCG AAGACAACCC GCGCAACTGG
GGCGCCGACG TGGTCGTGGA TCACCCGCTG GAGCTGCGCG CAGTACTCGA TCGAGCGCTC
TGCAGCTGCT GA
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| Protein sequence | MRLRAVLFDM DGTLLDSAPD FIAVTQAMRS ARGLPPLADK AIRDQVSGGA RAMVACAFAE
DPDSAAFETL RQEFLERYQE HCAVLTRPFD GIEALLADIE QARLPWGVAT NKPLRYAEPI
MHRLNLAERS AVLVCPDHVA LSKPAPDMLL LACEKIGVQP QEVLFIGDDE RDIESGRAAG
CRTAAVTYGY IHPEDNPRNW GADVVVDHPL ELRAVLDRAL CSC
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