| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1842 |
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| Symbol | |
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| ID | 5109972 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2028079 |
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| End bp | 2029005 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640503074 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001187338 |
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| Protein GI | 146306873 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.721538 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 0.677546 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCCCCC CCAGCCAGTC CAACACCATC GATTTCGACG CCGCCAAGCT GCAGCGCCTC
GGCTTCACCG GCAACCGCAA TCTGCCGCTC AAGCCCGTCA GCCTGGTCAT GTTGCGTCAG
CAGCTGAGCC TGCAGCTGCA GACCAGCCTG GATGTCGAAC GCATCCTCAG CCTGTTCTTT
CGCGAGGTGC AGCGGCTGGT CCCCCTCGAT GCCCTGGCCT TCCAGCATCC CTCGCATGAC
CTGCGCCTGG AGCTGGGCGA GCGCGCCCCG CACTCGGCCG GCTACCGCCT GAGTCATGAA
GGTGAGTACC TGGGTGAACT GATCTTCCGG CGCAAGCAGC GCTTTTCCGA CGACGAGCTG
GCGCAGCTGG AATCGCTGCT GGCCTGCCTG CTGTTCCCCC TGCGCAACGC GCTGCTGTAC
CGCACCGCGC TGAAGAGTGC GCTGCGCGAC CCGCTGACCG ACACCGGCAA CCGCATCGCC
ATGGACCAGG TGCTGCAACG CGAGGTGGAT CTGGCCCGCC GCAATCTGCA GCCGCTGTCG
CTGCTGATGC TCGACATCGA TCATTTCAAG GTCATCAACG ACAGCCACGG CCACGCGCTG
GGCGACGAGG TACTGAAGGC CGTCGCGCAA ACGCTGAAAA ACCAGCTGCG CAACATCGAT
ATGGTGTTCC GCTACGGCGG CGAGGAGTTT CTGGTGATTC TCTCCGGCAC CAATCGCGAA
GGGGCAGCCC TGGTGGGCGA ACGCCTGCGC TTTGCCGTGC TCGAGCTGCA GTGCCTGGAT
GCCGGCCGGC CGATCGAGGT TTCCATCAGC CTGGGCTGCG CCAGCCTGTT GCCGGGCGAA
TCCGGTGAAA GCCTGCTGCG CCGCGCCGAC AGCGCCCTGT ATGTGGCCAA GCGCGAAGGA
CGCAACCGCC TGACCATGGC CGGTTGA
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| Protein sequence | MVPPSQSNTI DFDAAKLQRL GFTGNRNLPL KPVSLVMLRQ QLSLQLQTSL DVERILSLFF
REVQRLVPLD ALAFQHPSHD LRLELGERAP HSAGYRLSHE GEYLGELIFR RKQRFSDDEL
AQLESLLACL LFPLRNALLY RTALKSALRD PLTDTGNRIA MDQVLQREVD LARRNLQPLS
LLMLDIDHFK VINDSHGHAL GDEVLKAVAQ TLKNQLRNID MVFRYGGEEF LVILSGTNRE
GAALVGERLR FAVLELQCLD AGRPIEVSIS LGCASLLPGE SGESLLRRAD SALYVAKREG
RNRLTMAG
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