| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1803 |
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| Symbol | |
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| ID | 5109933 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1980479 |
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| End bp | 1982629 |
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| Gene Length | 2151 bp |
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| Protein Length | 716 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640503035 |
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| Product | ABC transporter related |
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| Protein accession | YP_001187299 |
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| Protein GI | 146306834 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.239145 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACGGC CGATGCCCGC CAGCGACCCG CGGCTCAGCC ATGATGACCC GCTGCTCGAT
GGTCTGTTGA TTCTCTGTCG CCTGCACGGC TGCTCGGCCA GCCGTGGCAG CCTCAGTGCC
GGCCTGCCCA TGCCTGAGCA ACGCCTGACT CCCGACCTGC TGGCGCGTGC CGCGGCACGG
GCCGGGCTGC AAGGCCGTCT GCTGCAGCGC GATCTCGCCA GCATATCCCC TCTGAACCTG
CCGGTGCTGC TGCTGCTCAA GGACGGTCGT AGCGCCGTGC TGCGGCAATG GGGCGCAAAG
CAACAGGCGC AGATCCTGCC CTGCGAAACG GAGGGCGGCG AGCAGTGGGT CAGCCTTGAA
CAACTGGCAG CCGAATACAG CGGCAGGGCT TTCTTCGCCC GCCCGCGGCA TGAGCTGGAA
GAGGCGCGCA CACCCCTGGT TCCGCGCATC GAGGCCTGGT TCCGCGACAC ACTCAAGCTG
TCGCGCTGGC TCTATACCGA TGCCGTACTG GCCAGCCTGC TGATCAACCT GCTGGGGCTG
ATGGTGCCGC TGTTCGTGAT GCAGACCTAC GACCGCGTGG TGCCCAACCA GGCCACCGCC
ACGCTCTGGG TGCTGGCCAT CGGTCTGCTG ATCGGTACCG GCTTCGAGCT GCTGCTGAAG
ATCCTGCGCG CGCACCTGCT CGACACCGCC GGCAAGAAGA CCGACGTGGT GCTCTCGGCC
ACCCTATTCG AGCGCATCAC CGGCATGTCG ATGAAGGCGC GGCCGGCCAC CGTGGGCGGC
TTCGCGCAGA GCATCCATGA CTTCCAGGGG CTGCGCGATT TTCTCACCGC AGTAACCCTG
ACCAGCCTGA TCGACCTGCC CTTCTCACTG CTGATGCTGC TGGTGATCTG GCTGATCGGC
GGGCCGCTGG TGGCCATTCC GCTGCTGGCA TTCCCGATCA CCGCGCTGTT CGCCTTCATC
ATCCAGGTGC GCCTGCGTGA CACGGTGCAG AAGAGCCTGC AGCTCGGCGC ACAGCGCCAG
GCCCTACTGA TCGAAACCCT CGGCGGCCTG GAAACGCTCA AGGCCTGCGG CGCCGAAAGC
GAGCGCCAGC ACCAGTGGGA ACAGACCCAT GGCGCCCTCA CCCGCCTGGA CAGCCATGCA
AAGTTCCTCG CCTCGCTGGC CACCAACGGC ACCCTGTTCC TGCAGCAATT CGCCGGCATG
GCCACCATTG TCGCCGGGGT TTACGCGATC ATCGCCGGCA ACCTCAGCGT CGGCGCGCTG
GTGGCCTGCT ACATGCTCGG CAGCCGCATC CTCGCCCCGC TGGGGCAGAT CGCCGGGTTG
ATCACCCGCT ATCAGCAGGC GCGCCTGACC ATGACCAGCA CCGATGCGCT GATGGCGCTG
CCCCAGGAGC GCCAGGACAA GCAGCGGCCG CTGGATCGCA CCCAGCTCAA GGGCAGCCTG
GAGATTCGCC AGGTCAGCTT CACCTACCCC GGACAGAATG CACCGGCACT GAACAACGTC
AGCCTGCGTC TGGCGGCTGG TGAACGCCTC GGCATCATCG GCCGCAGCGG CTCGGGCAAG
AGCACCCTGG CCCGGTTACT GATGGCCTTC TACAGCGCCG ACGAGGGGCA GATTCTCCTG
GACAATCTGG ACCTGCGCCA ACTGGACGTG GCCGACCTGC GCCACCAGAT CGGTTATGTC
GCCCATGATC TGCCGCTGCT GGCCGGCAGC CTGCGCGACA ACCTGACTCT CGGTGCCCGT
TACGTCAGCG ACGCACGCAT GCTGGAGGTG GCCGAGCTGA CGGGTGTGGT CGATCTGGCG
CGCCAGCACC CACAAGGTTT CGACCGACCG GTGGGTGAAC GCGGCCAGCT GCTCTCCGGC
GGCCAGCGTC AGGCCGTGCT GCTGGCCCGC GCGCTGCTGC TCGACCCGCC AATCCTGGTG
CTCGACGAGC CCACCAGCGC CATGGACAAC ACCAGCGAGG ACCTGCTGCG CCAGCGCCTG
CACAAGTGGG TGCAGGGCAA GACGCTGATC CTCATCACCC ACCGCGCCTC CATGCTCAGC
CTGGTGGATC GCCTGGCCGT GCTGGACAAC GGCCAGGTGG TGGCGGACGG ACCGAAGGAA
GCGGTGATCG AAGCCTTGCG CAAGGGCCGT GTCGGCCCGG CCAGCCTGTA G
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| Protein sequence | MERPMPASDP RLSHDDPLLD GLLILCRLHG CSASRGSLSA GLPMPEQRLT PDLLARAAAR
AGLQGRLLQR DLASISPLNL PVLLLLKDGR SAVLRQWGAK QQAQILPCET EGGEQWVSLE
QLAAEYSGRA FFARPRHELE EARTPLVPRI EAWFRDTLKL SRWLYTDAVL ASLLINLLGL
MVPLFVMQTY DRVVPNQATA TLWVLAIGLL IGTGFELLLK ILRAHLLDTA GKKTDVVLSA
TLFERITGMS MKARPATVGG FAQSIHDFQG LRDFLTAVTL TSLIDLPFSL LMLLVIWLIG
GPLVAIPLLA FPITALFAFI IQVRLRDTVQ KSLQLGAQRQ ALLIETLGGL ETLKACGAES
ERQHQWEQTH GALTRLDSHA KFLASLATNG TLFLQQFAGM ATIVAGVYAI IAGNLSVGAL
VACYMLGSRI LAPLGQIAGL ITRYQQARLT MTSTDALMAL PQERQDKQRP LDRTQLKGSL
EIRQVSFTYP GQNAPALNNV SLRLAAGERL GIIGRSGSGK STLARLLMAF YSADEGQILL
DNLDLRQLDV ADLRHQIGYV AHDLPLLAGS LRDNLTLGAR YVSDARMLEV AELTGVVDLA
RQHPQGFDRP VGERGQLLSG GQRQAVLLAR ALLLDPPILV LDEPTSAMDN TSEDLLRQRL
HKWVQGKTLI LITHRASMLS LVDRLAVLDN GQVVADGPKE AVIEALRKGR VGPASL
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