Gene Pmen_1793 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1793 
Symbol 
ID5109373 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1967252 
End bp1967983 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content66% 
IMG OID640503025 
Productbeta-lactamase domain-containing protein 
Protein accessionYP_001187289 
Protein GI146306824 
COG category[R] General function prediction only 
COG ID[COG0491] Zn-dependent hydrolases, including glyoxylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATCG TCAGTCGTGA CCGCTGGTTC GAGGTGGAGC ACCGCCACGA TGGCATCTGC 
CTGATCCACG AGCCCTACGT GCGCCCCTTC TACCGCTGCA ACATGTGGCA TGTGCAGGGC
CGTGCGCATG ACGTGCTGAT CGACTCCGGC TCCGGGCTGG TCAGCCTGCG CGAGCAGCTG
CCGTGGCTGA CCGAGAAACC GCTGCTGGCG GTGGCCAGCC ACTGCCATTT CGACCATATC
GCCGGGCATC ACGAATTCGC CGAGCGCCTG GTGCATCCGG CCGAGGCCGA GATCCTCGCC
GCACCGGATG GCGCCAATAC CCTGGCCACG GACTTCGTCG GCGACGACAT GTTCGAGGCG
CATCCGGACT GCCCGCTGTG CTACGCCGAA TACCGGGTAC GGGCAGCGCC GGCCACCCGC
CTGATCGAGG ATGGCGATGT GCTGGATCTG GGAGATCGGG TGTTGCAGGT GCTGCACACG
CCCGGCCATT CACCCGGCGG CATCAGCCTG TGGGAAGCGA GGACGCAAAC GCTGTTCTCC
GGCGACATCC TCTACGACGG CCCGTTGATC GAGGACGCCT ACCACTCCAA CCTGGAGGAT
TACGCGCGCA GCCTTGCGCG CCTGCGCGAG CTGCCCGTAC GCACCGTGCA TGGCGGGCAT
TTCGCGAGTT TCTCCGGCGA GCGCATGCGC GAGCTGATAG ACGCCTGGTT CGACGCCCAT
CGGCTCAGTT GA
 
Protein sequence
MKIVSRDRWF EVEHRHDGIC LIHEPYVRPF YRCNMWHVQG RAHDVLIDSG SGLVSLREQL 
PWLTEKPLLA VASHCHFDHI AGHHEFAERL VHPAEAEILA APDGANTLAT DFVGDDMFEA
HPDCPLCYAE YRVRAAPATR LIEDGDVLDL GDRVLQVLHT PGHSPGGISL WEARTQTLFS
GDILYDGPLI EDAYHSNLED YARSLARLRE LPVRTVHGGH FASFSGERMR ELIDAWFDAH
RLS