| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1777 |
|---|
| Symbol | |
|---|
| ID | 5109357 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 1951004 |
|---|
| End bp | 1952275 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640503009 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001187273 |
|---|
| Protein GI | 146306808 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.909044 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.825456 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCCA CCTTCGCTTC GCATCAGGAG TCCTGCTCGA TGTCCCTTCG CCTGCCGCTG
TATTCGTCTG CGCTGTTGCT GAGTCTTGGT TGGCCGGCCT GGGCCGCCAC CCAGAAGGTC
GATCTGGATT ACCGGGTGCG CTTCGTGCCG GAAAGCAACC AGGCCGAGGT CAGCATCACC
CTGGAGAAGG GCGAGCGGAT ACGCAGCCTG GATTTCAACC TGGGCCAGGA CGGCCGCTAT
AGCGACTTCA AGGCCGATGG GCAGTGGTCC GAGGAGACCC CGGGGCGCGG CAAATGGCAG
CCGGCCGAAG GCAAGAGCGT GCTGAGCTAT CGGGTGACGA TCGACAAGGA GCGCCAGCCC
GGCCGCTACG ACGCACGCAT GACGCCGGAC TGGGCGCTGC TGCGTGGCGA CAACCTGGTG
CCCGCCGCGG TGCTCGACCA GCGCGACAAG ACCGAGCTGG TGGCGCGGCT GCAGTTCGAG
CTGCCCAAAG GCTGGAAGAG CGTGGAAACC GGCTGGCCGC GCATCGGCAA GAACCGCTTT
CGCATCGACA ACCCGCAGCG CAAGTTCGAC CGTCCCACCG GCTGGATAAT CGCCGGCAAG
CTGGGCACCC GGCGTACGCG TCTGGGCGAC ACCGATGTGG CCATCTCCGC GCCGGTGGGC
GAGGGCATGC GGCGCATGGA TATCATGACC TTCCTGACCT TCGTCTGGCC GCAGATGCAG
CAGGTGTTCC CGCGCGATCC GGACAAGCTG CTGATCGTCG GCGCCGGCGA CCCCATGTGG
CGCGGTGGCC TGTCGGCGGC CAATTCCTAC TACATGCATG CCGATCGCCC GCTGGTCAGC
GAGAACGGCA CCAGCGCGCT GGTGCATGAG CTGGTGCACG TGTTCAGCCG CATCTACGCA
CGCGATCGCA GCGACTGGAT CACCGAAGGG CTGGCCGAGT ACTACGCCAT TGAGGTGATG
CGCAGGGCCG GTGGCATCAG CGAAGAGCGT CATCAGAAGA TTCGCGAGCA GCTGATCCGC
TGGAGCAAGC CGGTCACCAG CCTGCGTACC GACAACGCCA GCGGCGCCGT TACTGCGCGT
GCCGTGCTGC TGTTGCAGGA ACTGGACCGG GAAATCCGTC AGAAGACCAA GGACAAGGGC
AATCTCTCGC TGGATGACGT GACCCGCGGC CTGATGCGCC TGGATCGGGT CAGCACCAAG
GATTTCATCG AGATCACCGA GAACGTCATC GGTGGGCCGT CGAAGACCCT GGATACGCGT
CTGCTGCGCT AG
|
|---|
| Protein sequence | MAATFASHQE SCSMSLRLPL YSSALLLSLG WPAWAATQKV DLDYRVRFVP ESNQAEVSIT
LEKGERIRSL DFNLGQDGRY SDFKADGQWS EETPGRGKWQ PAEGKSVLSY RVTIDKERQP
GRYDARMTPD WALLRGDNLV PAAVLDQRDK TELVARLQFE LPKGWKSVET GWPRIGKNRF
RIDNPQRKFD RPTGWIIAGK LGTRRTRLGD TDVAISAPVG EGMRRMDIMT FLTFVWPQMQ
QVFPRDPDKL LIVGAGDPMW RGGLSAANSY YMHADRPLVS ENGTSALVHE LVHVFSRIYA
RDRSDWITEG LAEYYAIEVM RRAGGISEER HQKIREQLIR WSKPVTSLRT DNASGAVTAR
AVLLLQELDR EIRQKTKDKG NLSLDDVTRG LMRLDRVSTK DFIEITENVI GGPSKTLDTR
LLR
|
|---|
| |