| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1773 |
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| Symbol | |
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| ID | 5109353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1948040 |
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| End bp | 1949173 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640503005 |
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| Product | ribonuclease D |
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| Protein accession | YP_001187269 |
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| Protein GI | 146306804 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0349] Ribonuclease D |
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| TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.148789 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.31629 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCTAACG ACATTTACTG GATCCGCGAC AACGCCAGCC TGGCCGAACA CTGCGCCGCC
TGGCGTGCCT TGCCTTTCGT CGCGCTGGAC ACCGAGTTCA TGCGCGTCGA TACCTTCTAC
CCCATTGCCG GCCTGCTGCA GGTCAGCGGT GGCGACAAGG CCTATCTGAT CGATCCGCTG
TGCATCGACG ACTGGAGGCC TCTGGCCGAG CTGCTGCAGG CGCAGACGGT GGTGAAGGTG
CTGCACTCGT GCAGCGAGGA CCTGGAGGTG TTTCTGCGCC TGACCGGCAG CCTGCCGGTG
CCGCTGTTCG ACACCCAGGT GGCGGCCGGC TATCTCAACC TTGGTTTTTC CATGGGCTAT
TCGCGCCTGG TGCAGACCCT GCTGGGCATC GAGCTGCCCA AGGGCGAGAC GCGCTCCGAC
TGGCTGCAGC GGCCGCTGTC CGCGACCCAG ATCAGCTACG CGGCCGAGGA CGTGCTGCAT
CTGGTGGAGG TCTATCAGGC GCTGACGCAG CGGTTGTCCG CCGAGAAGCA CGCCTGGGTG
CTGGAAGACG GCGCCGAGCT GGTGGCCGCG CTGAGCCGCG AAGTCGACCC CGACGAGCTC
TGGCGCGAGG CCAAGCTGGC CTGGAAGCTG TCGCGTCAGC AGCAGGCGGT GCTGCGCGCG
CTGTGCGCCT GGCGCGAGCG TCAGGCGCGG GCGCGCAACC AGCCGCGCAA CCGCATCCTG
CGCGAGCATT CGCTGTGGCC GCTGGCACGC ACCCAGCCGG ATAACCTGGT GGCCCTGGCG
CGTATCGAGG ACATGCATCC GAAAACCGTG CGTCAGGACG GCGAAACCCT GCTGCAGCTG
ATTCGCGAGG CCGCGGCATT GCCACCTGAG CAATGGCCTG AGGCCTTGCC CGAGCCGCTG
CCGATCGAAG CGTCTGCGCT GCTCAAGAAG CTGCGTGCCG TGGGCCAGCG CGAGGGCGAG
CGGCTGGAGA TCGTCCCCGA GCTGATGTTG CGCAAGAAGA CCCTGGAGGC CCTGCTCAAG
AGCGGCTACC CCAACGGCCC CTACCAATTG CCCGACTCCC TGCGCGGCTG GCGCCGGGAG
CTGATGGGCC AGGCCCTGCT CGACTGCCTG GCCGCAGAAG GAGAACCCGA GTGA
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| Protein sequence | MANDIYWIRD NASLAEHCAA WRALPFVALD TEFMRVDTFY PIAGLLQVSG GDKAYLIDPL
CIDDWRPLAE LLQAQTVVKV LHSCSEDLEV FLRLTGSLPV PLFDTQVAAG YLNLGFSMGY
SRLVQTLLGI ELPKGETRSD WLQRPLSATQ ISYAAEDVLH LVEVYQALTQ RLSAEKHAWV
LEDGAELVAA LSREVDPDEL WREAKLAWKL SRQQQAVLRA LCAWRERQAR ARNQPRNRIL
REHSLWPLAR TQPDNLVALA RIEDMHPKTV RQDGETLLQL IREAAALPPE QWPEALPEPL
PIEASALLKK LRAVGQREGE RLEIVPELML RKKTLEALLK SGYPNGPYQL PDSLRGWRRE
LMGQALLDCL AAEGEPE
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