Gene Pmen_1753 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1753 
SymbolcobD 
ID5109333 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1928063 
End bp1928971 
Gene Length909 bp 
Protein Length302 aa 
Translation table11 
GC content70% 
IMG OID640502985 
Productcobalamin biosynthesis protein 
Protein accessionYP_001187249 
Protein GI146306784 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1270] Cobalamin biosynthesis protein CobD/CbiB 
TIGRFAM ID[TIGR00380] cobalamin biosynthesis protein CobD 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCTGG CGCTGATCAC CTGCGCCGGT GTGGCGCTGG ACGCCGTGCT GGGCGAGCCA 
CGCCGCGCGC ATCCGCTGGT GGCCTTCGGG CGCCTGGCTG ATCGCCTGGA GCAGCGTTTC
AACCCGGCCG GCGGTGGCTG GCGCAGCCAT GGCGTCACCG CCTGGTGCCT GGCAGTGCTG
CCGCTGACCC TGCTTACCTG GCTGCTGGTG CAGATCAGCG GGGTGGGCTG GGCGGTGGAG
ATCTTCGCCC TGTATTTCGC CCTTGGCCTG CGCAGTCTTT ACGAGCACGC GCAGCCGGTG
GCCCGCGCGC TGCGCCTGGG CGATCTGCAG CTGGCACGCG AGCGGGTCGG CTGGATGGTC
AGCCGCAACA CCGCCGAGCT GGACGCCACC GGCGTGGCTC GCGCCGGTAC CGAGTCGGTG
CTGGAGAACG GTTCCGATGC GGTATTCGCC GCCTTGTTCT GGTTCATCGT CGCCGGTGCG
CCCGGCGTGG TGCTGTACCG CCTGAGTAAT ACCCTGGACG CCATGTGGGG CTATCGCAAC
GAGCGCTTCG AGCGCTTCGG CTGGGCGGCG GCGAAGATCG ATGACCTACT CAATTACATC
CCGGCGCGCT TGGTGGCGCT GACCTATGCG CTGCTCGGGA ATACCCTTCT GGCGCTGCGC
TGCTGGCGCC GGCAGGCGCC GTTGTGGGAC AGTCCCAATG CTGGCCCGGT GATGGCCGCT
GGCGCCGGCA GCCTGGGAGT GAGTCTCGGT GGCGCCGCCG AATACCACGG CGAGCTGCAT
GAGCGCCCGC AGCTGGGCGA GGGCCCGGCG CCGCGCGCGC GGGATATCGA ACGGGCGATG
AACCGGGTCG TTGCCGGCGT TGGCCTGTGG TTGCTGTGCC TGATGATCTG GGAGGTGCTG
GGTGCTTGA
 
Protein sequence
MSLALITCAG VALDAVLGEP RRAHPLVAFG RLADRLEQRF NPAGGGWRSH GVTAWCLAVL 
PLTLLTWLLV QISGVGWAVE IFALYFALGL RSLYEHAQPV ARALRLGDLQ LARERVGWMV
SRNTAELDAT GVARAGTESV LENGSDAVFA ALFWFIVAGA PGVVLYRLSN TLDAMWGYRN
ERFERFGWAA AKIDDLLNYI PARLVALTYA LLGNTLLALR CWRRQAPLWD SPNAGPVMAA
GAGSLGVSLG GAAEYHGELH ERPQLGEGPA PRARDIERAM NRVVAGVGLW LLCLMIWEVL
GA