Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1734 |
Symbol | rumA |
ID | 5109314 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1910932 |
End bp | 1912284 |
Gene Length | 1353 bp |
Protein Length | 450 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640502965 |
Product | 23S rRNA 5-methyluridine methyltransferase |
Protein accession | YP_001187230 |
Protein GI | 146306765 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.203726 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAGAC GCAGCTCCAA CCTGCGCTTT CAGCCCAGCG GTGGCAGTCG CGCGGCGCAG GTCCCGGTCG GCAAGAAGCA GAAACTCGCC ATCGAGCGCC TGGCCGGTGA CGGTCGCGGC ATCGCCTTCG AAGGCGGGCG TACCTGGTTC GTCAGCGGCG CCCTGGCTGG CGAGCAGGTC GAGGCGCGGG TGCTCGGCGC CCGCAGCCAG ACCGTCGAGG CGCGCGCCGA ACGCATCATC GTCGCCAGCA GCGAGCGTCG CGAGGCGCCC TGCATTCATG CCGAGCGCTG CGGCGGTTGC AACCTGCAGC ACATGCCGCA TGCCGATCAG CTCGCCCTGA AACAGCGCAC GCTCACCGAG CAGTTGTCAC GTTTGGGTGG CGTGCAGCCG GATGAATGGG CGGCGTCCCT GGTTGGCCCC GAGTTCGGCT ACCGCCGCCG CGCGCGCGTT GCCGTGCGCT GGGATGCCAA GGCGCGTCAA CTGCAGGTCG GTTTCCGCGC CGAAGCCAGC CAGGATATCG TCGCCATCGA CCACTGTCCG GTACTGGTAC AGCCCTTGCA GCCGATTTTC AGGGCATTGC CGGCGTTGTT GCGCAGCCTG GAAAAACCGC AGGCGGTCGG GCATGTGGAG CTGTTCAGCG GCACCGCCGA AACCGTGCTG CTGCGCCATA CCGCGCAACT GCCCGAGGCC GATCTGAGCC GTCTGCGCGC CTTCTGCGGC GAGCATCGCG CGCAGCTCTG GCTGCAGGGC GAGGGGCAGC CGCAGCCTGA CGATCCGGCG GCCGAGCTGG GGTTCGAGTT GACGCGCTGG CAGCTGCGGC TGGCCTATCG CCCGGGCGAT TTCGTGCAGG TCAACGGTCC GGTCAACGAG GCCATGGTCG CTCAGGCGCT AGACTGGTTG TCAGTGCAAC CCGGCGAGCG GGTGCTGGAC CTGTTCTGCG GCCTGGGCAA TTTCGCCCTG CCGCTGGCGC GTCAGGCGGC CGAAGTGGTG GCCGTGGAAG GTGTCGAGGC GATGGTCGCG CGGGCTGCGG CCAACGCACG GAGCAACGGG CTGGACAATG CGCACTTTTT CCGTGCCGAC CTGTCCAACC CGCTGGCCAA TGAAACCTGG GCGCGTGGCG GTTTTGCCGC TGTGCTGCTC GATCCGCCGC GCGATGGCGC GCTGGAGGCG GTGCGCGGGA TGAGTGCATT GGGCGCCCGG CGTCTGGTCT ACGTCTCCTG CAACCCGACC ACCCTGGCGC GCGATGCCGC GGAGCTGGCG CAGCAGGGAT ACCGGCTGCG CCGTGCCGGG ATTCTCGACA TGTTCGCGCA GACCGCGCAT GTCGAAGCCA TGGCGTTGTT CGAAAAGATT TAG
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Protein sequence | MARRSSNLRF QPSGGSRAAQ VPVGKKQKLA IERLAGDGRG IAFEGGRTWF VSGALAGEQV EARVLGARSQ TVEARAERII VASSERREAP CIHAERCGGC NLQHMPHADQ LALKQRTLTE QLSRLGGVQP DEWAASLVGP EFGYRRRARV AVRWDAKARQ LQVGFRAEAS QDIVAIDHCP VLVQPLQPIF RALPALLRSL EKPQAVGHVE LFSGTAETVL LRHTAQLPEA DLSRLRAFCG EHRAQLWLQG EGQPQPDDPA AELGFELTRW QLRLAYRPGD FVQVNGPVNE AMVAQALDWL SVQPGERVLD LFCGLGNFAL PLARQAAEVV AVEGVEAMVA RAAANARSNG LDNAHFFRAD LSNPLANETW ARGGFAAVLL DPPRDGALEA VRGMSALGAR RLVYVSCNPT TLARDAAELA QQGYRLRRAG ILDMFAQTAH VEAMALFEKI
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