Gene Pmen_1734 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1734 
SymbolrumA 
ID5109314 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1910932 
End bp1912284 
Gene Length1353 bp 
Protein Length450 aa 
Translation table11 
GC content69% 
IMG OID640502965 
Product23S rRNA 5-methyluridine methyltransferase 
Protein accessionYP_001187230 
Protein GI146306765 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 
TIGRFAM ID[TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.203726 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAGAC GCAGCTCCAA CCTGCGCTTT CAGCCCAGCG GTGGCAGTCG CGCGGCGCAG 
GTCCCGGTCG GCAAGAAGCA GAAACTCGCC ATCGAGCGCC TGGCCGGTGA CGGTCGCGGC
ATCGCCTTCG AAGGCGGGCG TACCTGGTTC GTCAGCGGCG CCCTGGCTGG CGAGCAGGTC
GAGGCGCGGG TGCTCGGCGC CCGCAGCCAG ACCGTCGAGG CGCGCGCCGA ACGCATCATC
GTCGCCAGCA GCGAGCGTCG CGAGGCGCCC TGCATTCATG CCGAGCGCTG CGGCGGTTGC
AACCTGCAGC ACATGCCGCA TGCCGATCAG CTCGCCCTGA AACAGCGCAC GCTCACCGAG
CAGTTGTCAC GTTTGGGTGG CGTGCAGCCG GATGAATGGG CGGCGTCCCT GGTTGGCCCC
GAGTTCGGCT ACCGCCGCCG CGCGCGCGTT GCCGTGCGCT GGGATGCCAA GGCGCGTCAA
CTGCAGGTCG GTTTCCGCGC CGAAGCCAGC CAGGATATCG TCGCCATCGA CCACTGTCCG
GTACTGGTAC AGCCCTTGCA GCCGATTTTC AGGGCATTGC CGGCGTTGTT GCGCAGCCTG
GAAAAACCGC AGGCGGTCGG GCATGTGGAG CTGTTCAGCG GCACCGCCGA AACCGTGCTG
CTGCGCCATA CCGCGCAACT GCCCGAGGCC GATCTGAGCC GTCTGCGCGC CTTCTGCGGC
GAGCATCGCG CGCAGCTCTG GCTGCAGGGC GAGGGGCAGC CGCAGCCTGA CGATCCGGCG
GCCGAGCTGG GGTTCGAGTT GACGCGCTGG CAGCTGCGGC TGGCCTATCG CCCGGGCGAT
TTCGTGCAGG TCAACGGTCC GGTCAACGAG GCCATGGTCG CTCAGGCGCT AGACTGGTTG
TCAGTGCAAC CCGGCGAGCG GGTGCTGGAC CTGTTCTGCG GCCTGGGCAA TTTCGCCCTG
CCGCTGGCGC GTCAGGCGGC CGAAGTGGTG GCCGTGGAAG GTGTCGAGGC GATGGTCGCG
CGGGCTGCGG CCAACGCACG GAGCAACGGG CTGGACAATG CGCACTTTTT CCGTGCCGAC
CTGTCCAACC CGCTGGCCAA TGAAACCTGG GCGCGTGGCG GTTTTGCCGC TGTGCTGCTC
GATCCGCCGC GCGATGGCGC GCTGGAGGCG GTGCGCGGGA TGAGTGCATT GGGCGCCCGG
CGTCTGGTCT ACGTCTCCTG CAACCCGACC ACCCTGGCGC GCGATGCCGC GGAGCTGGCG
CAGCAGGGAT ACCGGCTGCG CCGTGCCGGG ATTCTCGACA TGTTCGCGCA GACCGCGCAT
GTCGAAGCCA TGGCGTTGTT CGAAAAGATT TAG
 
Protein sequence
MARRSSNLRF QPSGGSRAAQ VPVGKKQKLA IERLAGDGRG IAFEGGRTWF VSGALAGEQV 
EARVLGARSQ TVEARAERII VASSERREAP CIHAERCGGC NLQHMPHADQ LALKQRTLTE
QLSRLGGVQP DEWAASLVGP EFGYRRRARV AVRWDAKARQ LQVGFRAEAS QDIVAIDHCP
VLVQPLQPIF RALPALLRSL EKPQAVGHVE LFSGTAETVL LRHTAQLPEA DLSRLRAFCG
EHRAQLWLQG EGQPQPDDPA AELGFELTRW QLRLAYRPGD FVQVNGPVNE AMVAQALDWL
SVQPGERVLD LFCGLGNFAL PLARQAAEVV AVEGVEAMVA RAAANARSNG LDNAHFFRAD
LSNPLANETW ARGGFAAVLL DPPRDGALEA VRGMSALGAR RLVYVSCNPT TLARDAAELA
QQGYRLRRAG ILDMFAQTAH VEAMALFEKI