| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1729 |
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| Symbol | |
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| ID | 5109309 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1904010 |
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| End bp | 1905005 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640502960 |
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| Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
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| Protein accession | YP_001187225 |
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| Protein GI | 146306760 |
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| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.00707615 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 0.973505 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCATCT GCCTGTTCAG CAGCAAGCCC TATGACCGCG ACAGCTTCCT CGCCGGCGCA
CGCCCGCAAG ACTGGCAGCT GCAGTTCCAC GAGACGCGCC TGACCGCGGC CAGTGCCGCG
CTGGCCGACG GCTGCGAGGT GGTCTGCGCC TTCATCAACG ATGATCTGTC GGCGCCGGTG
CTGGAGCGTC TGGCGGCGAG CGGCACACGC CTGATCGCCC TGCGCTCGGC CGGCTACAAC
CATGTCGACC TCGCGGCAGC GCAACGCCTG CGGCTACCCG TGGTACGCGT GCCGGCCTAT
TCGCCGCATG CGGTGGCCGA ACATGCCGTG GCGCTGATCC TGGCGCTGAA CCGGCGTATC
CACCGTGCCT TCAACCGCAC CCGCGAGGGG GATTTCTCGC TGCACGGGCT GAGCGGCTTC
GACCTGCACG GCAAGACCGT CGGGGTGATA GGCGGCGGCA AGATCGGCCA GGCGTTCGCC
CGCATCATGC ATGGCTTCGG CTGCCAGGTG CTGGTCTACG ATCCGTTCCC GCTCGCCGGG
CTCGATGCCA TCGGCGCGCG CCAGGCGCCA TTGGACGAGG TGATCGGCCA GAGCGACATC
CTCAGCCTGC ACTGCCCGTT GACGGAGGCC AGCTACCACC TGATCGATGC CACTCGCCTG
GCGCAGATGA AGCGCGGCGT CATGCTGATC AATACCGGCC GCGGCGCACT GGTCGACACC
CCGGCGCTGA TCGGCGCGCT GAAAAACGGC CAGCTCGGCT ACCTGGGCCT GGACGTGTAC
GAAGAGGAAT CGGAACTGTT CTTCGAAGAC CATTCCGACC TGCCGCTGCA GGACGACACC
CTGGCCCGCC TGCTGACCTT CCCCAATGTC ATCGTGACCG CGCACCAGGC CTTTCTTACC
CATGAAGCCC TGGCCGCCAT CGCCCGCACC ACGCTGGACA ACATCGCCGC CTGGCTCGCC
GGCAGCCCGC GCAATGAGGT CAAGGCCGGC GCGTGA
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| Protein sequence | MRICLFSSKP YDRDSFLAGA RPQDWQLQFH ETRLTAASAA LADGCEVVCA FINDDLSAPV
LERLAASGTR LIALRSAGYN HVDLAAAQRL RLPVVRVPAY SPHAVAEHAV ALILALNRRI
HRAFNRTREG DFSLHGLSGF DLHGKTVGVI GGGKIGQAFA RIMHGFGCQV LVYDPFPLAG
LDAIGARQAP LDEVIGQSDI LSLHCPLTEA SYHLIDATRL AQMKRGVMLI NTGRGALVDT
PALIGALKNG QLGYLGLDVY EEESELFFED HSDLPLQDDT LARLLTFPNV IVTAHQAFLT
HEALAAIART TLDNIAAWLA GSPRNEVKAG A
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