Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1720 |
Symbol | |
ID | 5109300 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 1893245 |
End bp | 1895026 |
Gene Length | 1782 bp |
Protein Length | 593 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640502951 |
Product | hypothetical protein |
Protein accession | YP_001187216 |
Protein GI | 146306751 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00248368 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.287373 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGATTAA ACGTGCGGAC TTTAAATAAG TCCCCCTATC TTTTATTGCC ACTGAGTTGC CTGATCGGCT CGGCAACGGC GGCGAACTTC CAGTTCGGCG AGTTCGAAGG CCAGCTGGAT TCCTCACTGT GGATCGGCAC CAGCATCGCC ACGTCCAATC CGGACCCCAA GCTGATGCGC AGCGCCAGCG GCGACGACGG TCGACGCAAC TTCGGCGCTG GCGACGCCTT TTCCGGACTG TTCAAGGGCA CCCACGACCT GGAACTGCGC CATGGCGACT TCGGCGCCTT CCTGCGCGGC AGCTACTGGT ACGACTATGT GCTGCGTGAT CGCGAACAGC CCTTCAAGGA CGTGGTCGAC AACAATCGCA AGCGCTCGGC GAAATCGGCC GGCGCAGAGC TGCTGGACGC CTTCGTCTAC TACAACTATG CCCTCGCCGA TCAACCCGGC TCCGCACGTC TGGGCAAGCA GGTGGTCAAC TGGGGCGAGA GCACCTTCAT TCAGGGTGGC CTCAACACGG TCAACCCCTA CAACCTGTCG GCATTGCGCC GGCCGGGTGC CGAGGTCAAG GAAGGCCTGG TGCCGGTGAA CATGTTCTAT CTGTCGCAGA ACCTCAGCGA AGCGCTTTCC GGCGACTTCT TCTACCAGCT GGACTGGGAA CAGACCCAGC TCGACAACTG CGGCACCTTC TTTTCCAGCA GCGACTTCCT GGCCGATGGC TGCGACGGTC TGGACGTCGG CGCGGTGCTC ACCGGCAATC CTGCGGCAGT TGCAGCGCTG GCCCCCTTCG AGGTCAATCT CACCGACGAG GGCATCCGCA TTCCGCGCGC CAAGGATCAG GACGCACGCA ACGGCGGGCA ATGGGGCCTT TCGCTGCGCT GGTTCGCCGC CGAACTGGAT ACGGAGTTCG GCGCCTTCGT CGCCAACTAC CACAGCCGCC TGCCCTACAT GGGCACCATC AGCAGCCCCT ACTACAACAG CACGGTGTTC GGCCCAACAC TCAACGGCGC CCTGCGCCTC GGCACCTCGC AGTACGTGGT GCAGTACCCT GAAGACATCC GTCTGTACGG CCTTACCTTC GCCACCAACC TGTCCACCGG GACGGCGCTG CAGGGCGAGA TCAGCTACCG GCCGAACATG CCGATCCAGC TCAACGGCAC CGATATCATC CAGTCGCTGC TCAATGCCCC GGCGCGCTCG CCACTGGTGG CACAGGGCAT CCGCCCCAAC GCACCTAACA CGCTGTTCAA TGGCTACCGG CGCAAGGAGG TGACCCAGGC CCAGGTCACG GCCACCCACT CCTTCAGCCA GGTCATGGGT GCCGATCAGC TGGTGCTGAT CGGCGAACTC GGCGGCACCT GGGTCGGCGG CCTGGAAGGC AAGTTCGGCC CGCGCTACGG GCGCAACGGC ACCTTCGGCA ACGGCATCCT CGCCAGTGGC GCCTGCGCGT CCATCTCGCA AACACCCGAG CACTGCAACG ACGAAGGCTT CCTCACGCCA TTCTCCTGGG GCTACCGGGT ACGTGCCACC TGGAGCTATG CCAACGCCGT CGCCGGCATC GACCTGCGTC CCAGTCTGTC CTGGCAGCAC GATGTCGACG GCAACGGCCC CGGCGAAGGC TCGGCTTTCA GCGAAGGCTC CAGGGCCATC AGCGTCGGCC TCGATGCCAC GCTGAACAAC ACCTACAACG CCAGCCTGGC GTACACCAAC TACATGGATG GTGACTACGG CACCCGTGGC GATCGCGACT TCGTCTCGAT CAGCCTGGGC GTCAATTTCT AA
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Protein sequence | MRLNVRTLNK SPYLLLPLSC LIGSATAANF QFGEFEGQLD SSLWIGTSIA TSNPDPKLMR SASGDDGRRN FGAGDAFSGL FKGTHDLELR HGDFGAFLRG SYWYDYVLRD REQPFKDVVD NNRKRSAKSA GAELLDAFVY YNYALADQPG SARLGKQVVN WGESTFIQGG LNTVNPYNLS ALRRPGAEVK EGLVPVNMFY LSQNLSEALS GDFFYQLDWE QTQLDNCGTF FSSSDFLADG CDGLDVGAVL TGNPAAVAAL APFEVNLTDE GIRIPRAKDQ DARNGGQWGL SLRWFAAELD TEFGAFVANY HSRLPYMGTI SSPYYNSTVF GPTLNGALRL GTSQYVVQYP EDIRLYGLTF ATNLSTGTAL QGEISYRPNM PIQLNGTDII QSLLNAPARS PLVAQGIRPN APNTLFNGYR RKEVTQAQVT ATHSFSQVMG ADQLVLIGEL GGTWVGGLEG KFGPRYGRNG TFGNGILASG ACASISQTPE HCNDEGFLTP FSWGYRVRAT WSYANAVAGI DLRPSLSWQH DVDGNGPGEG SAFSEGSRAI SVGLDATLNN TYNASLAYTN YMDGDYGTRG DRDFVSISLG VNF
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