Gene Pmen_1716 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1716 
Symbol 
ID5109296 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1889645 
End bp1891033 
Gene Length1389 bp 
Protein Length462 aa 
Translation table11 
GC content67% 
IMG OID640502947 
Producthypothetical protein 
Protein accessionYP_001187212 
Protein GI146306747 
COG category[S] Function unknown 
COG ID[COG5361] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0458772 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.0905883 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGATTCG CTAAGAAGAC TCGTTGGCGC CTGGGCCTCG TCGTCATGCT CGTGCTGCTG 
AGCGGCCTGG CCACCCAGCG CGTGATGCAG CAGGCGCGGG AAACGGCCCA GGCCTACCTG
TTCGCCTACC CGCTGGTGTT GATGGAGCTG ACCAAGCAGC ATCAGCAGCT GCTCGGCACC
ACCGCTATCA ACGGCTTCCG CCACAGCCGG CGCTTTCCCG ACGCGCGCTT CAACAGCGTG
GTATCACCGA ACGTCGACAC CCTGTACAGC ATCGTGCACT TCGATCTGCG CCAGGAGCCG
GTGGTGATGA GCACTCCGGA CACCAGCGGG CACTACTACA TGATGCCGAT CATGGATGCC
TGGACCAACG TGGTGAGCAG CCCCGGTACG CGCACCATCG GCAGCCGCGC ACAAACCTAT
CTGGTCGTGG GACCGACCTG GCGTGGCGAG GTGCCGGCCG GCATGCAGCC GATCCGCATC
CCGACGCAGA TGGCCTGGAT GATCGGCCGC ATCAAGAGCC GCGGCCCAGC CGATTACGCC
GAGGTGCACA CCCTGCAGGA CCGCTTCCGC ATCATGCCGC TGAGCGCCTG GCAGGGCCGC
CCGGTTACGC CCTTACCGAC AGCGATGACC GAACTACCCA CGCTGGACCG CGCCACGGGG
CCGGACCGGC AGCTGGCCGG CTGGAGCCGC GAGGACTTCT TCGGCGCCTT CTGCCGACTG
CTGACCGACA ACCCGGCCCG CGCCGAGGAC GCGCCGATGC TCGCACGCAT TCAGGCCACC
GGCCTGCTCG ACGAGGGCTG TGCACTGCAG CAGTCGCCAC TGCAGCGTCT CGGCAGTGCA
CTGGGCTATC GCCGGGTGGT CGCCATGCTC AACGACAGCC AGCGCCTGAT GGGTGAACGC
AAGACCTACC AGGGCTGGCG CATCGGCTAC GAGTTGGGCG AGTACGGCAC CCGCTACGCG
CAGCGCGCGC TGGTGGCCAA GATCGGGCTG GGTGCCAACT CGCCGGAAGA TGCCATCTAC
CCGAACCTGC ATACCGATAC CGAGGACCGT CCGCTAGCGG GCAACAGACG CTACGTGCTG
CACTTCGCCG CCGGGCAATT GCCACCGGTA CGCGCCTTCT GGTCGCTGAC CCTGTACGAC
GAGCGCCAGC TGCTTTCGGC CAACCCGCTC GACCGCTATG CCCTCGGTGA CCGCGACGAC
CTGCACTACA ACCCGGACGG CTCGCTGGAC ATCTTCGTCC AGCATCAGGC GCCGACCGAC
CCGGCACAAC ACAGCAACTG GCTGCCAGCG CCCGAGGGCC GCTTCAACCT GTTCCTGCGC
CTGTACTGGC CGCAGGCCGA CGTGCTGGAA AGACGCTGGC TGCCGCCGGC AATCCGCACG
CTGCCCTGA
 
Protein sequence
MRFAKKTRWR LGLVVMLVLL SGLATQRVMQ QARETAQAYL FAYPLVLMEL TKQHQQLLGT 
TAINGFRHSR RFPDARFNSV VSPNVDTLYS IVHFDLRQEP VVMSTPDTSG HYYMMPIMDA
WTNVVSSPGT RTIGSRAQTY LVVGPTWRGE VPAGMQPIRI PTQMAWMIGR IKSRGPADYA
EVHTLQDRFR IMPLSAWQGR PVTPLPTAMT ELPTLDRATG PDRQLAGWSR EDFFGAFCRL
LTDNPARAED APMLARIQAT GLLDEGCALQ QSPLQRLGSA LGYRRVVAML NDSQRLMGER
KTYQGWRIGY ELGEYGTRYA QRALVAKIGL GANSPEDAIY PNLHTDTEDR PLAGNRRYVL
HFAAGQLPPV RAFWSLTLYD ERQLLSANPL DRYALGDRDD LHYNPDGSLD IFVQHQAPTD
PAQHSNWLPA PEGRFNLFLR LYWPQADVLE RRWLPPAIRT LP