| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1700 |
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| Symbol | |
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| ID | 5109674 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1869679 |
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| End bp | 1871139 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640502929 |
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| Product | sodium:neurotransmitter symporter |
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| Protein accession | YP_001187196 |
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| Protein GI | 146306731 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0733] Na+-dependent transporters of the SNF family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.0878592 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCGTG AAAAACCCAA GAACCTCTGG CTCTCGCGCT GGGGCTTCAT CCTCGCTGCA
ACCGGCTCGG CCGTGGGCCT GGGCAATATC TGGAAGTTCC CCTACATCAC CGGCGAGTAC
GGCGGCGGCG CCTTCGTGCT GATGTACCTG GCGTGCATCC TGGCCATCGG CATTCCGGTG
ATGATGACCG AGATCGCCAT CGGCCGCCGC GGCCGCGGCA GCCCCATCGA TGCCATCGGC
CGGGTGGTGC GCGAGAACCA GGGCAACCCG CTGTGGAAGG CGGTCGGCGG CATGGCCATG
CTCGCCGGTT TCATGATCCT GTGTTTCTAC GTGGTGGTGG CCGGCTGGGC CTTCGCCTAC
ACGTGGAAGA TGCTCGACGG CTCGCTGGCC GCCACCAGCG TCGAGGCGCT CGGCGGGGTG
TTCGAGGCGC ACAACGCCAA CCCCTGGCAG CTCGGCGGCT GGAGTGTGCT GGTGGCGCTG
CTGACCCTGT GGATCGTGGC CAAGGGCGTG CAGCAGGGCA TCGAGAACGC CGTGCGCTGG
ATGATGCCGG GGCTGGCGCT GATGCTGATC GTGCTGGTCG GCTACGCCTT CACCAGCGGC
AGCTTCCAGG CCGGGTTCGA CTTCCTGTTC CATTTCGATG CCTCGAAGAT CACCGGCGAG
GCGTTGCTGG CCGCATTGGG CCATGCCTTC TTCACCCTCA GCCTGGCCTC GGGCGCCATC
CTCACCTACG GCTCCTACAT CCCCGACGGC CAGTCCATCG CCCGCACCAC CTTTCTCGTA
GCGATCTGCG ACACCTGCGT GGCGCTGCTG GCGGGGCTGG CGATCTTCCC GATCATCTTC
GCCAATGGCA TGAGCCCGGG CGCTGGGCCG GGGCTGATCT TCATGAGCCT GCCGCTGGCC
TTCCAGCAGA TGCCGCTGGG CACCGCCTTC GGCGTGCTGT TCTTCGCCAT GGTGTCGATC
GCCGCGCTGA CCTCGGCCAT CTCCATGATC GAGGCCACCG TCGCCTACCT GAACGAGAAA
CACGGCATCA GCCGCCTGAA GTCCGCTGCC TTGGCCGGTG CCGTGCTGCT GGTCATCAGC
CTGCTGGCGA TGCTGTCGTT CAACCTGCTG GCCGGCTGGA CGCCGCTGGG CAAGAACGTC
TTCGACTGGC TGGACTACCT GACCTCGCGC TGGATGATGC CGCTGGGCGG AATCTGCATG
GCGATCCTCG CCGGCTACGT GCTCAATCGC GAGATCATGC GTGACGAGCT GGACCTGCCG
CCGCTGGGTT ATGCGCTGTG GCTGTTCATG GTGCGTTACG TCAGCCCGGT GCTGATCATG
GTGGTGTTCC TCCACGCCCT GGGCTGGCTG CTGTTCGATC CGGTGGCGCA GTGGTACTGG
ATCGCCGGCG CCATCGGCCT GCTGACGGTC GCCGGCGAGG TGCTGCGGCC ACGCGTGGTG
CCGGTGCTGG CCGGTCGCTG A
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| Protein sequence | MTREKPKNLW LSRWGFILAA TGSAVGLGNI WKFPYITGEY GGGAFVLMYL ACILAIGIPV
MMTEIAIGRR GRGSPIDAIG RVVRENQGNP LWKAVGGMAM LAGFMILCFY VVVAGWAFAY
TWKMLDGSLA ATSVEALGGV FEAHNANPWQ LGGWSVLVAL LTLWIVAKGV QQGIENAVRW
MMPGLALMLI VLVGYAFTSG SFQAGFDFLF HFDASKITGE ALLAALGHAF FTLSLASGAI
LTYGSYIPDG QSIARTTFLV AICDTCVALL AGLAIFPIIF ANGMSPGAGP GLIFMSLPLA
FQQMPLGTAF GVLFFAMVSI AALTSAISMI EATVAYLNEK HGISRLKSAA LAGAVLLVIS
LLAMLSFNLL AGWTPLGKNV FDWLDYLTSR WMMPLGGICM AILAGYVLNR EIMRDELDLP
PLGYALWLFM VRYVSPVLIM VVFLHALGWL LFDPVAQWYW IAGAIGLLTV AGEVLRPRVV
PVLAGR
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