| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1697 |
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| Symbol | |
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| ID | 5109671 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1866505 |
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| End bp | 1867644 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640502926 |
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| Product | homogentisate 1,2-dioxygenase |
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| Protein accession | YP_001187193 |
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| Protein GI | 146306728 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3508] Homogentisate 1,2-dioxygenase |
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| TIGRFAM ID | [TIGR01015] homogentisate 1,2-dioxygenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.196029 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCGCC AATGGATCCG CTTTCCCCTG CGTGAAGGCG AGTGCTCGCG CCAGGCGCAT
TGCGACCTGC CGCAGGGCAC CTACGAGCGC GAGATGGGCC GTGAGGGCTT CTTCGGCCCC
ACCGCGCACC TGCACCACAA GCATCCGCCC ACCGGCTGGA TCGACTGGGA AGGCCCGCTG
CGCCCGCACG CGTTCAACTT CAACGACATC CCCAGCGAGC GCGACTGCCC GCTGGCGGCG
CCGCTGACCC TGCACAACGC CGATGTGAAG TTGCGCGTGT GGCGCACCCA CGGCGCCATG
CGCCACCTGG TGCGCAACGC CGACGGCGAC GAGCTGCTGT TCGTCCACGA GGGGGCAGGG
CACCTGTATT GCGATTTCGG CCATCTGGAG TACCGCGACG GCGATTACCT GCTGATCCCC
CGCGGCACCG CCTGGCGCAT CGAGGCCAGC ACGCCGAGCT ACTTCCTGCT GATCGAGAAC
AGCGACGGCG CCTACCAGCT GCCGGACAAG GGCCTGCTGG GCCCACAGGC GATCTTCGAC
CCCGCCGTGC TCGATCATCC GCGGCTCGAC GAGGCCTTCA AGGCGCAGCA GGACGAGAAC
ACCTGGCAGA TCAGGATCAA GCGGCGCAAT CAGATCAGCA CCGTGACCTA CCCGTACAAC
CCGCTGGACG TGGTCGGCTG GCACGGCGAC AACACCGTGG TGCGCCTGAA CTGGCGCGAC
ATTCGTCCGC TGCTCAGTCA CCGCTATCAC CTGCCGCCGT CGGCGCACAC CACCTTCGTC
GCCAACGGCT TCGTGGTCTG CACCTTCACC CCGCGGCCGG TCGAATCCGA CCCCGGCGCG
CTCAAGGTGC CGTTCTATCA CAACAACGAC GACTACGACG AAGTGCTGTT TTACCACCGC
GGCAACTTCT TCAGCCGCGA CAACATCGAG GCCGGGATGG TCACTCTGCA CCCCTGCGGT
TTCCCCCACG GGCCGCACCC CAAGGCGCTG AAAAAGAGCC AGGAGGACCC GGCGACCTTC
ATCGACGAGG TGGCGGTGAT GATCGACACC CGCCGCGCCC TGGAAGTGGC CGATGCCGCC
GACGCGGTGG ACGTGGCCGA GTACGTCAAC TCCTGGCGCG CGCCGGGTAC ACAAGGTTAA
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| Protein sequence | MSRQWIRFPL REGECSRQAH CDLPQGTYER EMGREGFFGP TAHLHHKHPP TGWIDWEGPL
RPHAFNFNDI PSERDCPLAA PLTLHNADVK LRVWRTHGAM RHLVRNADGD ELLFVHEGAG
HLYCDFGHLE YRDGDYLLIP RGTAWRIEAS TPSYFLLIEN SDGAYQLPDK GLLGPQAIFD
PAVLDHPRLD EAFKAQQDEN TWQIRIKRRN QISTVTYPYN PLDVVGWHGD NTVVRLNWRD
IRPLLSHRYH LPPSAHTTFV ANGFVVCTFT PRPVESDPGA LKVPFYHNND DYDEVLFYHR
GNFFSRDNIE AGMVTLHPCG FPHGPHPKAL KKSQEDPATF IDEVAVMIDT RRALEVADAA
DAVDVAEYVN SWRAPGTQG
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