Gene Pmen_1686 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1686 
Symbol 
ID5109660 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1855905 
End bp1856891 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content66% 
IMG OID640502915 
Producthypothetical protein 
Protein accessionYP_001187182 
Protein GI146306717 
COG category[R] General function prediction only 
COG ID[COG2962] Predicted permeases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value0.658717 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACATTT CTTCCGGCCG TTGGCTATAC GGCCTGCTGC TCGCCCTGAC CACGTCCGTG 
TTGTGGGGCA TCCTGCCGAT CAAACTGAAA GAAGTTCTTC AGGTGATGGA CCCGATCACC
GTCACCTGGT ACCGCCTGGC GGTGGCCGGT TCGCTGTTGC TGGCCTACCT CGCCGCCTCG
CGTCGTTTGC CGCGCTTTCG CCCGCTGGGC CGCAAGGGCG GCTGGCTGCT GGCGCTGGCC
GTCGCCGGGC TGACCGCCAA CTACGTGCTC TATCTGATGG GGCTCAACCT GCTCAGCCCG
GGCACCACGC AACTGGTGAT CCAGGTGGCG CCGATTCTGC TGCTGATCAG CAGCCTGTTC
GTTTTCCGCG AGCGGTTCAG CCTGGGCCAG GCGATTGGCC TGCTGGTGAT GCTGCTGGGC
TTCGGCCTGT TCTTCAACCA GCGCCTGGGC GAGCTGCTGA CTTCGCTGAC CACCTACACC
ACGGGTGTGC TCACCGTGCT GGCGGCTGCT TTCGTCTGGA CCTTCTACGG CCTGGCGCAG
AAGCAGTTGC TGACGCTGTG GAGTTCGGTG CAGGTGATGA TGGTGATCTA CCTGGCCTGC
GCACTGCTGC TGACGCCCTG GGCGCATCCG CTGCAAGTGC TGGAGTTGAG CCCGCTGCAG
GGCTGGTTGC TGCTCGCCTG CTGCCTGAAC ACTCTGGTGG CTTACGGGGC CTTCGCCGAG
GCGCTGGCGC ACTGGGAGGC CTCCAGGGTC AGCGCGACCC TGGCCCTGAC GCCACTGGTG
ACCTTCGTTT CGGTGGCCCT GGCGGCGAGC TGGTGGCCCG ACCACGTGCT GCCCGAGCAG
GTCAACTGGA TCGCCTACGC CGGTGCGGTG GTGGTGGTCC TGGGTTCGGC GCTGACCGCC
CTTGGGCCAT CGATCATGGC CAGCTGGCGT GCGCGAGCGG CCTCCATACA CCTTGACGAG
ACGGAGCGAG AGCAATGGAC GAAATGA
 
Protein sequence
MHISSGRWLY GLLLALTTSV LWGILPIKLK EVLQVMDPIT VTWYRLAVAG SLLLAYLAAS 
RRLPRFRPLG RKGGWLLALA VAGLTANYVL YLMGLNLLSP GTTQLVIQVA PILLLISSLF
VFRERFSLGQ AIGLLVMLLG FGLFFNQRLG ELLTSLTTYT TGVLTVLAAA FVWTFYGLAQ
KQLLTLWSSV QVMMVIYLAC ALLLTPWAHP LQVLELSPLQ GWLLLACCLN TLVAYGAFAE
ALAHWEASRV SATLALTPLV TFVSVALAAS WWPDHVLPEQ VNWIAYAGAV VVVLGSALTA
LGPSIMASWR ARAASIHLDE TEREQWTK